Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Clostridium tetani E88

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine biosynthesis 2 4
TF BirA Biotin Biotin biosynthesis 4 3
TF CBO1205 Multidrug efflux; Macrolides efflux 2 2
TF Cbei_4343 Multidrug resistance; Multidrug efflux 2 1
TF CcpA HPr, phosphocarrier protein Carbohydrate metabolism 38 24
TF CymR Cysteine metabolism 2 1
TF HcpR Nitric oxide Nitrosative stress response 8 7
TF HrcA Heat shock Heat shock response 3 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 2
TF LexA DNA damage SOS response 3 2
TF NiaR Niacin NAD biosynthesis 2 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 17 13
TF YtrA Multidrug resistance; Multidrug efflux; Antibiotic resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 6 6
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 13 8
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 4 1
RNA Glycine Glycine Glycine metabolism 5 3
RNA L10_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 3 2
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 1 1
RNA Purine Adenine; Guanine Purine metabolism 7 1
RNA PyrR PyrR Pyrimidine metabolism 5 3
RNA SAM S-adenosylmethionine Methionine biosynthesis 5 4
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Arg) Arg-tRNA Amino acid metabolism 3 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 3 2
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 3 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 2 2
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 1 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 1 1
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 2 3
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 1 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 2 2
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 1 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 2 1
RNA T-box(Val) Val-tRNA Amino acid metabolism 1 1
RNA THF Tetrahydrofolate Folate metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ydaO-yuaA Cell wall metabolism; Osmotic stress response 3 2
RNA yybP-ykoY 1 1
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise