Regulog PyrR - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | PyrR |
| RFAM: | RF00515 |
| Regulation mode: | |
| Biological process: | Pyrimidine metabolism |
| Effector: | PyrR |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - PyrR
- By effector - PyrR
- By pathway - Pyrimidine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 11 | 3 |
| Clostridium sp. SS2/1 | ||
| Clostridium cellulolyticum H10 | 9 | 2 |
| Clostridium phytofermentans ISDg | ||
| Clostridium tetani E88 | 3 | 3 |
| Clostridium acetobutylicum ATCC 824 | 8 | 3 |
| Clostridium botulinum A str. ATCC 3502 | 12 | 5 |
| Clostridium novyi NT | 9 | 3 |
| Clostridium perfringens ATCC 13124 | 10 | 4 |
| Clostridium difficile 630 | 9 | 2 |
| Clostridium beijerincki NCIMB 8052 | 10 | 3 |
| Clostridium sp. OhILAs | 7 | 3 |
| Clostridium sp. L2-50 | ||
| Clostridium scindens ATCC 35704 | ||
| Clostridium nexile DSM 1787 | ||
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | 6 | 2 |
| Clostridium butyricum 5521 | 12 | 4 |
| Clostridium bolteae ATCC BAA-613 | ||
| Clostridium bartlettii DSM 16795 | 9 | 3 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| pyrR |
*
Clostridium kluyveri DSM 555 Site: position = -119 score = 42.7 sequence = AATATCCTTTAAAAT... Gene: CKL_1201: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
|
*
Clostridium cellulolyticum H10 Site: position = -200 score = 45.53 sequence = TTACCTTTAAATTAG... Gene: Ccel_0611: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
|
*
Clostridium tetani E88 Site: position = -91 score = 41.3 sequence = TAAATCCTTTAAAGT... Gene: CTC01613: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Gene: CAC2113: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*2
Clostridium botulinum A str. ATCC 3502 Site: position = -119 score = 29.81 sequence = AAAGCCCTTTAAATG... Gene: CBO2821: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR Site: position = -237 score = 42.1 sequence = TTACCTTTAAAATGA... Gene: CBO1478: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Gene: NT01CX_1953: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Gene: CPF_2103: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Gene: CD2595: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Gene: Cbei_1596: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Gene: Clos_1418: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
|
|
|
|
Gene: CLOHIR_01119: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Gene: CBY_0086: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
|
*
Clostridium bartlettii DSM 16795 Site: position = -156 score = 24.33 sequence = ATATACCTTTAATTG... Gene: CLOBAR_01469: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
| pyrB |
*
Clostridium kluyveri DSM 555 Site: position = -151 score = 45.53 sequence = CTGAACCTTTAAGAC... Gene: CKL_3361: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: CLOSS21_01646: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: Ccel_0612: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: null: Aspartate carbamoyltransferase (EC 2.1.3.2) |
*
Clostridium tetani E88 Site: position = -146 score = 54.53 sequence = TAAAGCCTTTAAAAA... Gene: CTC02384: Aspartate carbamoyltransferase (EC 2.1.3.2) |
*
Clostridium acetobutylicum ATCC 824 Site: position = -150 score = 50.43 sequence = ATAAACCTTTAATTA... Gene: CAC2654: Aspartate carbamoyltransferase (EC 2.1.3.2) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -195 score = 37.0 sequence = TAAGACCTTTAAAAT... Gene: CBO3241: Aspartate carbamoyltransferase (EC 2.1.3.2) |
*
Clostridium novyi NT Site: position = -180 score = 33.25 sequence = GCGTGCCTTTAATTC... Gene: NT01CX_0395: Aspartate carbamoyltransferase (EC 2.1.3.2) |
*
Clostridium perfringens ATCC 13124 Site: position = -180 score = 46.94 sequence = AATAACCTTTAAATT... Gene: CPF_1387: Aspartate carbamoyltransferase (EC 2.1.3.2) |
*
Clostridium difficile 630 Site: position = -46 score = 27.81 sequence = ATACTTTTAATTTTA... Gene: CD0184: Aspartate carbamoyltransferase (EC 2.1.3.2) |
*
Clostridium beijerincki NCIMB 8052 Site: position = -165 score = 37.43 sequence = TAACCTTTAATTTGA... Gene: Cbei_1000: Aspartate carbamoyltransferase (EC 2.1.3.2) |
*
Clostridium sp. OhILAs Site: position = -94 score = 44.7 sequence = TTACCTTTAAATTAG... Gene: Clos_2188: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: CLOL250_01287: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: CLOSCI_00682: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: CLONEX_01423: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: CLOLEP_01555: Aspartate carbamoyltransferase (EC 2.1.3.2) |
*
Clostridium hiranonis DSM 13275 Site: position = -47 score = 25.16 sequence = ATAGCTTTAAATTCG... Gene: CLOHIR_00048: Aspartate carbamoyltransferase (EC 2.1.3.2) |
*
Clostridium butyricum 5521 Site: position = -158 score = 37.04 sequence = AATAACCTTTAATTT... Gene: CBY_2768: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: CLOBOL_04681: Aspartate carbamoyltransferase (EC 2.1.3.2) |
*
Clostridium bartlettii DSM 16795 Site: position = -47 score = 33.05 sequence = AATAACTTTTAATTT... Gene: CLOBAR_00677: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Aspartate carbamoyltransferase (EC 2.1.3.2) |
| pyrC |
2
Clostridium kluyveri DSM 555 Gene: CKL_3359: Dihydroorotase (EC 3.5.2.3) Gene: CKL_2401: Dihydroorotase (EC 3.5.2.3) |
Gene: CLOSS21_02222: Dihydroorotase (EC 3.5.2.3) |
Gene: Ccel_0613: Dihydroorotase (EC 3.5.2.3) |
Gene: null: Dihydroorotase (EC 3.5.2.3) |
Gene: CTC02382: Dihydroorotase (EC 3.5.2.3) |
Gene: CAC0519: Dihydroorotase (EC 3.5.2.3) |
Gene: CBO3239: Dihydroorotase (EC 3.5.2.3) |
Gene: NT01CX_0394: Dihydroorotase (EC 3.5.2.3) |
Gene: CPF_1385: Dihydroorotase (EC 3.5.2.3) |
Gene: CD1526: Dihydroorotase (EC 3.5.2.3) |
Gene: Cbei_1002: Dihydroorotase (EC 3.5.2.3) |
*
Clostridium sp. OhILAs Site: position = -494 score = 33.47 sequence = GTCGACCTTTAAGAA... Gene: Clos_2194: Dihydroorotase (EC 3.5.2.3) |
Gene: CLOL250_02240: Dihydroorotase (EC 3.5.2.3) |
Gene: CLOSCI_04057: Dihydroorotase (EC 3.5.2.3) |
Gene: CLONEX_00216: Dihydroorotase (EC 3.5.2.3) |
2
Clostridium leptum DSM 753 Gene: CLOLEP_01179: Dihydroorotase (EC 3.5.2.3) Gene: CLOLEP_00364: Dihydroorotase (EC 3.5.2.3) |
Gene: CLOHIR_01356: Dihydroorotase (EC 3.5.2.3) |
Gene: CBY_2766: Dihydroorotase (EC 3.5.2.3) |
2
Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_00063: Dihydroorotase (EC 3.5.2.3) Gene: CLOBOL_01666: Dihydroorotase (EC 3.5.2.3) |
Gene: CLOBAR_01636: Dihydroorotase (EC 3.5.2.3) |
Dihydroorotase (EC 3.5.2.3) |
| pyrF |
Gene: CKL_3358: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CLOSS21_00752: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: Ccel_0614: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: null: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CTC02381: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CAC2652: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CBO3238: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: NT01CX_0393: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CPF_1384: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
*
Clostridium difficile 630 Site: position = -146 score = 52.01 sequence = AAAGTCTTTTAAACT... Site: position = -261 score = 32.62 sequence = AAATTCCTTAAAGTA... Gene: CD3592: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: Cbei_1003: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: Clos_2193: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CLOL250_01418: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CLOSCI_04058: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CLONEX_00214: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CLOLEP_00363: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
*
Clostridium hiranonis DSM 13275 Site: position = -106 score = 47.31 sequence = AGTCTTTTAAGCTAG... Gene: CLOHIR_02208: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CBY_2765: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CLOBOL_03549: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
*
Clostridium bartlettii DSM 16795 Site: position = -141 score = 54.61 sequence = AAGTCTTTTAAAATA... Gene: CLOBAR_00209: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
| carA |
*
Clostridium kluyveri DSM 555 Site: position = -216 score = 31.49 sequence = TACACTTTAAATTGG... Gene: CKL_0649: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: CLOSS21_00313: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: Ccel_0615: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: null: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
|
*
Clostridium acetobutylicum ATCC 824 Site: position = -422 score = 46.91 sequence = ATATACCTTTAATGA... Gene: CAC2645: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
|
*
Clostridium novyi NT Site: position = -245 score = 50.86 sequence = ATTAACCTTTAATTT... Site: position = -365 score = 35.64 sequence = AAAGTCCTTTAAGGT... Gene: NT01CX_0383: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
*
Clostridium perfringens ATCC 13124 Site: position = -283 score = 29.2 sequence = AATACACTTTAAATT... Gene: CPF_2898: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
2
Clostridium difficile 630 Gene: CD3589: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) Gene: CD3591: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
*
Clostridium beijerincki NCIMB 8052 Site: position = -232 score = 33.88 sequence = TACACTTTAACTTGG... Gene: Cbei_0028: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
|
Gene: CLOL250_00038: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: CLOSCI_02024: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
|
2
Clostridium leptum DSM 753 Gene: CLOLEP_02637: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) Gene: CLOLEP_02636: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
2
Clostridium hiranonis DSM 13275 Gene: CLOHIR_01717: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) Gene: CLOHIR_02209: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
*
Clostridium butyricum 5521 Site: position = -225 score = 29.02 sequence = GATGCACTTTAACTT... Gene: CBY_2289: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: CLOBOL_02798: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: CLOBAR_00210: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
| carB |
Gene: CKL_0650: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: CLOSS21_00314: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: Ccel_0616: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: null: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
|
Gene: CAC2644: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
|
Gene: NT01CX_0382: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: CPF_2897: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
2
Clostridium difficile 630 Gene: CD3588: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) Gene: CD3590: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: Cbei_0029: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
|
Gene: CLOL250_00039: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: CLOSCI_02023: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
|
Gene: CLOLEP_02638: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
2
Clostridium hiranonis DSM 13275 Gene: CLOHIR_01718: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) Gene: CLOHIR_02210: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: CBY_2288: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: CLOBOL_02797: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: CLOBAR_00211: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
| pyrK |
Gene: CKL_3357: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CLOSS21_00751: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: Ccel_0617: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: null: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CTC02380: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CAC2651: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CBO3237: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: NT01CX_0392: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CPF_1383: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CD0185: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: Cbei_1004: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: Clos_2192: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CLOL250_01419: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CLOSCI_04059: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CLONEX_00213: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CLOLEP_00362: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CLOHIR_00049: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CBY_2764: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CLOBOL_03548: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Gene: CLOBAR_00676: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) |
| pyrD |
2
Clostridium kluyveri DSM 555 Gene: CKL_3356: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) Gene: CKL_2399: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CLOSS21_00750: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: Ccel_0618: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: null: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CTC02379: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CAC2650: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CBO3236: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: NT01CX_0391: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CPF_1382: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CD0186: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: Cbei_1005: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
2
Clostridium sp. OhILAs Gene: Clos_2455: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) Gene: Clos_2191: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
2
Clostridium sp. L2-50 Gene: CLOL250_01420: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) Gene: CLOL250_00148: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CLOSCI_04060: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CLONEX_00212: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CLOLEP_00361: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CLOHIR_00050: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CBY_2763: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CLOBOL_03547: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Gene: CLOBAR_00675: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
| pyrI |
Gene: CKL_3360: Aspartate carbamoyltransferase regulatory chain (PyrI) |
Gene: CLOSS21_01645: Aspartate carbamoyltransferase regulatory chain (PyrI) |
|
Gene: null: Aspartate carbamoyltransferase regulatory chain (PyrI) |
Gene: CTC02383: Aspartate carbamoyltransferase regulatory chain (PyrI) |
Gene: CAC2653: Aspartate carbamoyltransferase regulatory chain (PyrI) |
Gene: CBO3240: Aspartate carbamoyltransferase regulatory chain (PyrI) |
|
|
|
Gene: Cbei_1001: Aspartate carbamoyltransferase regulatory chain (PyrI) |
|
Gene: CLOL250_01288: Aspartate carbamoyltransferase regulatory chain (PyrI) |
Gene: CLOSCI_00683: Aspartate carbamoyltransferase regulatory chain (PyrI) |
Gene: CLONEX_01422: Aspartate carbamoyltransferase regulatory chain (PyrI) |
Gene: CLOLEP_01556: Aspartate carbamoyltransferase regulatory chain (PyrI) |
|
Gene: CBY_2767: Aspartate carbamoyltransferase regulatory chain (PyrI) |
Gene: CLOBOL_04682: Aspartate carbamoyltransferase regulatory chain (PyrI) |
|
Aspartate carbamoyltransferase regulatory chain (PyrI) |
| pyrE |
2
Clostridium kluyveri DSM 555 Gene: CKL_3355: Orotate phosphoribosyltransferase (EC 2.4.2.10) Gene: CKL_2202: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: CLOSS21_00748: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
|
Gene: null: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: CTC02378: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
|
Gene: CBO3235: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: NT01CX_0390: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: CPF_1381: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: CD0187: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: Cbei_1006: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: Clos_2190: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: CLOL250_01620: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
3
Clostridium scindens ATCC 35704 Gene: CLOSCI_00394: Orotate phosphoribosyltransferase (EC 2.4.2.10) Gene: CLOSCI_00395: Orotate phosphoribosyltransferase (EC 2.4.2.10) Gene: CLOSCI_04061: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
|
2
Clostridium leptum DSM 753 Gene: CLOLEP_03080: Orotate phosphoribosyltransferase (EC 2.4.2.10) Gene: CLOLEP_02037: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
|
Gene: CBY_2762: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
2
Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_03546: Orotate phosphoribosyltransferase (EC 2.4.2.10) Gene: CLOBOL_02853: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: CLOBAR_00674: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Orotate phosphoribosyltransferase (EC 2.4.2.10) |
| codB |
|
|
|
|
|
|
*
Clostridium botulinum A str. ATCC 3502 Site: position = -197 score = 37.75 sequence = TAGTACCTTTAAAAT... Gene: CBO2073: Cytosine/purine/uracil/thiamine/allantoin permease family protein |
|
|
|
|
Gene: Clos_2458: Cytosine/purine/uracil/thiamine/allantoin permease family protein |
|
|
|
|
|
*
Clostridium butyricum 5521 Site: position = -231 score = 29.84 sequence = AGTCCTTTAAGTTAT... Gene: CBY_1339: Cytosine/purine/uracil/thiamine/allantoin permease family protein |
|
|
Cytosine/purine/uracil/thiamine/allantoin permease family protein |
| codA |
|
|
|
|
Gene: CTC01883: Cytosine deaminase (EC 3.5.4.1) |
|
Gene: CBO2072: Cytosine deaminase (EC 3.5.4.1) |
|
Gene: CPF_0750: Cytosine deaminase (EC 3.5.4.1) |
|
|
Gene: Clos_2457: Cytosine deaminase (EC 3.5.4.1) |
|
|
|
|
|
Gene: CBY_1340: Cytosine deaminase (EC 3.5.4.1) |
|
|
Cytosine deaminase (EC 3.5.4.1) |
| pyrP |
Gene: CKL_1200: Uracil permease |
|
*
Clostridium cellulolyticum H10 Site: position = -202 score = 59.58 sequence = AAACTTTTAAATTAG... Gene: Ccel_0485: Uracil permease |
Gene: null: Uracil permease |
*
Clostridium tetani E88 Site: position = -21 score = 30.24 sequence = ATATACTTTTAAATT... Gene: CTC01612: Uracil permease |
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Clostridium acetobutylicum ATCC 824 Site: position = -47 score = 35.94 sequence = GAGGTACTTTTAATA... Gene: CAC2112: Uracil permease |
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Clostridium botulinum A str. ATCC 3502 Site: position = -44 score = 27.26 sequence = GCATCTTTTAAAATA... Gene: CBO1479: Uracil permease |
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Clostridium novyi NT Site: position = -215 score = 55.44 sequence = GATAATCTTTAATAC... Site: position = -86 score = 43.77 sequence = GATAACTTTTTAAAT... Gene: NT01CX_0192: Uracil permease |
*2
Clostridium perfringens ATCC 13124 Site: position = -207 score = 30.58 sequence = ACTATTCTTTAAAGA... Site: position = -84 score = 38.13 sequence = TTTACCTTTTTAAAT... Gene: CPF_1422: Uracil permease Site: position = -47 score = 26.12 sequence = AAACTTTTAATTTAG... Gene: CPF_1756: Uracil permease |
Gene: CD2594: Uracil permease |
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Clostridium beijerincki NCIMB 8052 Site: position = -38 score = 29.37 sequence = TTTTAATTTAGTTCA... Gene: Cbei_1715: Uracil permease |
*3
Clostridium sp. OhILAs Gene: Clos_0576: Uracil permease Gene: Clos_0867: Uracil permease Site: position = -96 score = 41.33 sequence = TAATACCTTTAAATC... Site: position = -241 score = 54.81 sequence = ATAAATCTTTAATGC... Gene: Clos_1951: Uracil permease |
Gene: CLOL250_02659: Uracil permease |
Gene: CLOSCI_02483: Uracil permease |
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Gene: CLOLEP_02867: Uracil permease |
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*2
Clostridium butyricum 5521 Site: position = -79 score = 27.06 sequence = AGACATATTTTAATT... Gene: CBY_3673: Uracil permease Gene: CBY_1449: Uracil permease |
Gene: CLOBOL_00010: Uracil permease |
Gene: CLOBAR_01468: Uracil permease |
Uracil permease |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |