Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PyrR - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: PyrR
RFAM: RF00515
Regulation mode:
Biological process: Pyrimidine metabolism
Effector: PyrR
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium kluyveri DSM 555 11 3
Clostridium sp. SS2/1
Clostridium cellulolyticum H10 9 2
Clostridium phytofermentans ISDg
Clostridium tetani E88 3 3
Clostridium acetobutylicum ATCC 824 8 3
Clostridium botulinum A str. ATCC 3502 12 5
Clostridium novyi NT 9 3
Clostridium perfringens ATCC 13124 10 4
Clostridium difficile 630 9 2
Clostridium beijerincki NCIMB 8052 10 3
Clostridium sp. OhILAs 7 3
Clostridium sp. L2-50
Clostridium scindens ATCC 35704
Clostridium nexile DSM 1787
Clostridium leptum DSM 753
Clostridium hiranonis DSM 13275 6 2
Clostridium butyricum 5521 12 4
Clostridium bolteae ATCC BAA-613
Clostridium bartlettii DSM 16795 9 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pyrR
*
Clostridium kluyveri DSM 555

Site:
position = -119
score = 42.7
sequence = AATATCCTTTAAAAT...

Gene: CKL_1201: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Clostridium sp. SS2/1
*
Clostridium cellulolyticum H10

Site:
position = -200
score = 45.53
sequence = TTACCTTTAAATTAG...

Gene: Ccel_0611: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Clostridium phytofermentans ISDg
*
Clostridium tetani E88

Site:
position = -91
score = 41.3
sequence = TAAATCCTTTAAAGT...

Gene: CTC01613: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2113: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*2
Clostridium botulinum A str. ATCC 3502

Site:
position = -119
score = 29.81
sequence = AAAGCCCTTTAAATG...

Gene: CBO2821: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR

Site:
position = -237
score = 42.1
sequence = TTACCTTTAAAATGA...

Gene: CBO1478: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Clostridium novyi NT

Gene: NT01CX_1953: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Clostridium perfringens ATCC 13124

Gene: CPF_2103: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Clostridium difficile 630

Gene: CD2595: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1596: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Clostridium sp. OhILAs

Gene: Clos_1418: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01119: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Clostridium butyricum 5521

Gene: CBY_0086: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Clostridium bolteae ATCC BAA-613
*
Clostridium bartlettii DSM 16795

Site:
position = -156
score = 24.33
sequence = ATATACCTTTAATTG...

Gene: CLOBAR_01469: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
pyrB
*
Clostridium kluyveri DSM 555

Site:
position = -151
score = 45.53
sequence = CTGAACCTTTAAGAC...

Gene: CKL_3361: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Clostridium sp. SS2/1

Gene: CLOSS21_01646: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Clostridium cellulolyticum H10

Gene: Ccel_0612: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Clostridium phytofermentans ISDg

Gene: null: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Clostridium tetani E88

Site:
position = -146
score = 54.53
sequence = TAAAGCCTTTAAAAA...

Gene: CTC02384: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Clostridium acetobutylicum ATCC 824

Site:
position = -150
score = 50.43
sequence = ATAAACCTTTAATTA...

Gene: CAC2654: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -195
score = 37.0
sequence = TAAGACCTTTAAAAT...

Gene: CBO3241: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Clostridium novyi NT

Site:
position = -180
score = 33.25
sequence = GCGTGCCTTTAATTC...

Gene: NT01CX_0395: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Clostridium perfringens ATCC 13124

Site:
position = -180
score = 46.94
sequence = AATAACCTTTAAATT...

Gene: CPF_1387: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Clostridium difficile 630

Site:
position = -46
score = 27.81
sequence = ATACTTTTAATTTTA...

Gene: CD0184: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Clostridium beijerincki NCIMB 8052

Site:
position = -165
score = 37.43
sequence = TAACCTTTAATTTGA...

Gene: Cbei_1000: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Clostridium sp. OhILAs

Site:
position = -94
score = 44.7
sequence = TTACCTTTAAATTAG...

Gene: Clos_2188: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Clostridium sp. L2-50

Gene: CLOL250_01287: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00682: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Clostridium nexile DSM 1787

Gene: CLONEX_01423: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Clostridium leptum DSM 753

Gene: CLOLEP_01555: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Clostridium hiranonis DSM 13275

Site:
position = -47
score = 25.16
sequence = ATAGCTTTAAATTCG...

Gene: CLOHIR_00048: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Clostridium butyricum 5521

Site:
position = -158
score = 37.04
sequence = AATAACCTTTAATTT...

Gene: CBY_2768: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04681: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Clostridium bartlettii DSM 16795

Site:
position = -47
score = 33.05
sequence = AATAACTTTTAATTT...

Gene: CLOBAR_00677: Aspartate carbamoyltransferase (EC 2.1.3.2)
Aspartate carbamoyltransferase (EC 2.1.3.2)
pyrC
 2
Clostridium kluyveri DSM 555

Gene: CKL_3359: Dihydroorotase (EC 3.5.2.3)

Gene: CKL_2401: Dihydroorotase (EC 3.5.2.3)
 
Clostridium sp. SS2/1

Gene: CLOSS21_02222: Dihydroorotase (EC 3.5.2.3)
 
Clostridium cellulolyticum H10

Gene: Ccel_0613: Dihydroorotase (EC 3.5.2.3)
 
Clostridium phytofermentans ISDg

Gene: null: Dihydroorotase (EC 3.5.2.3)
 
Clostridium tetani E88

Gene: CTC02382: Dihydroorotase (EC 3.5.2.3)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0519: Dihydroorotase (EC 3.5.2.3)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3239: Dihydroorotase (EC 3.5.2.3)
 
Clostridium novyi NT

Gene: NT01CX_0394: Dihydroorotase (EC 3.5.2.3)
 
Clostridium perfringens ATCC 13124

Gene: CPF_1385: Dihydroorotase (EC 3.5.2.3)
 
Clostridium difficile 630

Gene: CD1526: Dihydroorotase (EC 3.5.2.3)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1002: Dihydroorotase (EC 3.5.2.3)
*
Clostridium sp. OhILAs

Site:
position = -494
score = 33.47
sequence = GTCGACCTTTAAGAA...

Gene: Clos_2194: Dihydroorotase (EC 3.5.2.3)
 
Clostridium sp. L2-50

Gene: CLOL250_02240: Dihydroorotase (EC 3.5.2.3)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_04057: Dihydroorotase (EC 3.5.2.3)
 
Clostridium nexile DSM 1787

Gene: CLONEX_00216: Dihydroorotase (EC 3.5.2.3)
 2
Clostridium leptum DSM 753

Gene: CLOLEP_01179: Dihydroorotase (EC 3.5.2.3)

Gene: CLOLEP_00364: Dihydroorotase (EC 3.5.2.3)
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01356: Dihydroorotase (EC 3.5.2.3)
 
Clostridium butyricum 5521

Gene: CBY_2766: Dihydroorotase (EC 3.5.2.3)
 2
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_00063: Dihydroorotase (EC 3.5.2.3)

Gene: CLOBOL_01666: Dihydroorotase (EC 3.5.2.3)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01636: Dihydroorotase (EC 3.5.2.3)
Dihydroorotase (EC 3.5.2.3)
pyrF
 
Clostridium kluyveri DSM 555

Gene: CKL_3358: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium sp. SS2/1

Gene: CLOSS21_00752: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium cellulolyticum H10

Gene: Ccel_0614: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium phytofermentans ISDg

Gene: null: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium tetani E88

Gene: CTC02381: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2652: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3238: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium novyi NT

Gene: NT01CX_0393: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium perfringens ATCC 13124

Gene: CPF_1384: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
*
Clostridium difficile 630

Site:
position = -146
score = 52.01
sequence = AAAGTCTTTTAAACT...

Site:
position = -261
score = 32.62
sequence = AAATTCCTTAAAGTA...

Gene: CD3592: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1003: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium sp. OhILAs

Gene: Clos_2193: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium sp. L2-50

Gene: CLOL250_01418: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_04058: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium nexile DSM 1787

Gene: CLONEX_00214: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium leptum DSM 753

Gene: CLOLEP_00363: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
*
Clostridium hiranonis DSM 13275

Site:
position = -106
score = 47.31
sequence = AGTCTTTTAAGCTAG...

Gene: CLOHIR_02208: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium butyricum 5521

Gene: CBY_2765: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_03549: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
*
Clostridium bartlettii DSM 16795

Site:
position = -141
score = 54.61
sequence = AAGTCTTTTAAAATA...

Gene: CLOBAR_00209: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
carA
*
Clostridium kluyveri DSM 555

Site:
position = -216
score = 31.49
sequence = TACACTTTAAATTGG...

Gene: CKL_0649: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Clostridium sp. SS2/1

Gene: CLOSS21_00313: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Clostridium cellulolyticum H10

Gene: Ccel_0615: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Clostridium phytofermentans ISDg

Gene: null: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Clostridium tetani E88
*
Clostridium acetobutylicum ATCC 824

Site:
position = -422
score = 46.91
sequence = ATATACCTTTAATGA...

Gene: CAC2645: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Clostridium botulinum A str. ATCC 3502
*
Clostridium novyi NT

Site:
position = -245
score = 50.86
sequence = ATTAACCTTTAATTT...

Site:
position = -365
score = 35.64
sequence = AAAGTCCTTTAAGGT...

Gene: NT01CX_0383: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
*
Clostridium perfringens ATCC 13124

Site:
position = -283
score = 29.2
sequence = AATACACTTTAAATT...

Gene: CPF_2898: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 2
Clostridium difficile 630

Gene: CD3589: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Gene: CD3591: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
*
Clostridium beijerincki NCIMB 8052

Site:
position = -232
score = 33.88
sequence = TACACTTTAACTTGG...

Gene: Cbei_0028: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50

Gene: CLOL250_00038: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_02024: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Clostridium nexile DSM 1787
 2
Clostridium leptum DSM 753

Gene: CLOLEP_02637: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Gene: CLOLEP_02636: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 2
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01717: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Gene: CLOHIR_02209: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
*
Clostridium butyricum 5521

Site:
position = -225
score = 29.02
sequence = GATGCACTTTAACTT...

Gene: CBY_2289: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02798: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00210: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
carB
 
Clostridium kluyveri DSM 555

Gene: CKL_0650: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium sp. SS2/1

Gene: CLOSS21_00314: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium cellulolyticum H10

Gene: Ccel_0616: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium phytofermentans ISDg

Gene: null: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2644: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT

Gene: NT01CX_0382: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium perfringens ATCC 13124

Gene: CPF_2897: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 2
Clostridium difficile 630

Gene: CD3588: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)

Gene: CD3590: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0029: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50

Gene: CLOL250_00039: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_02023: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753

Gene: CLOLEP_02638: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 2
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01718: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)

Gene: CLOHIR_02210: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium butyricum 5521

Gene: CBY_2288: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02797: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00211: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
pyrK
 
Clostridium kluyveri DSM 555

Gene: CKL_3357: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium sp. SS2/1

Gene: CLOSS21_00751: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium cellulolyticum H10

Gene: Ccel_0617: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium phytofermentans ISDg

Gene: null: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium tetani E88

Gene: CTC02380: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2651: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3237: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium novyi NT

Gene: NT01CX_0392: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium perfringens ATCC 13124

Gene: CPF_1383: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium difficile 630

Gene: CD0185: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1004: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium sp. OhILAs

Gene: Clos_2192: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium sp. L2-50

Gene: CLOL250_01419: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_04059: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium nexile DSM 1787

Gene: CLONEX_00213: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium leptum DSM 753

Gene: CLOLEP_00362: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00049: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium butyricum 5521

Gene: CBY_2764: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_03548: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00676: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
pyrD
 2
Clostridium kluyveri DSM 555

Gene: CKL_3356: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)

Gene: CKL_2399: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium sp. SS2/1

Gene: CLOSS21_00750: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium cellulolyticum H10

Gene: Ccel_0618: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium phytofermentans ISDg

Gene: null: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium tetani E88

Gene: CTC02379: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2650: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3236: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium novyi NT

Gene: NT01CX_0391: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium perfringens ATCC 13124

Gene: CPF_1382: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium difficile 630

Gene: CD0186: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1005: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 2
Clostridium sp. OhILAs

Gene: Clos_2455: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)

Gene: Clos_2191: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 2
Clostridium sp. L2-50

Gene: CLOL250_01420: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)

Gene: CLOL250_00148: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_04060: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium nexile DSM 1787

Gene: CLONEX_00212: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium leptum DSM 753

Gene: CLOLEP_00361: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00050: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium butyricum 5521

Gene: CBY_2763: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_03547: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00675: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
pyrI
 
Clostridium kluyveri DSM 555

Gene: CKL_3360: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium sp. SS2/1

Gene: CLOSS21_01645: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg

Gene: null: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium tetani E88

Gene: CTC02383: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2653: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3240: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1001: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50

Gene: CLOL250_01288: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00683: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium nexile DSM 1787

Gene: CLONEX_01422: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium leptum DSM 753

Gene: CLOLEP_01556: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521

Gene: CBY_2767: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04682: Aspartate carbamoyltransferase regulatory chain (PyrI)
 
Clostridium bartlettii DSM 16795
Aspartate carbamoyltransferase regulatory chain (PyrI)
pyrE
 2
Clostridium kluyveri DSM 555

Gene: CKL_3355: Orotate phosphoribosyltransferase (EC 2.4.2.10)

Gene: CKL_2202: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium sp. SS2/1

Gene: CLOSS21_00748: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg

Gene: null: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium tetani E88

Gene: CTC02378: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3235: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium novyi NT

Gene: NT01CX_0390: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium perfringens ATCC 13124

Gene: CPF_1381: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium difficile 630

Gene: CD0187: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1006: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium sp. OhILAs

Gene: Clos_2190: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium sp. L2-50

Gene: CLOL250_01620: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 3
Clostridium scindens ATCC 35704

Gene: CLOSCI_00394: Orotate phosphoribosyltransferase (EC 2.4.2.10)

Gene: CLOSCI_00395: Orotate phosphoribosyltransferase (EC 2.4.2.10)

Gene: CLOSCI_04061: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium nexile DSM 1787
 2
Clostridium leptum DSM 753

Gene: CLOLEP_03080: Orotate phosphoribosyltransferase (EC 2.4.2.10)

Gene: CLOLEP_02037: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521

Gene: CBY_2762: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 2
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_03546: Orotate phosphoribosyltransferase (EC 2.4.2.10)

Gene: CLOBOL_02853: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00674: Orotate phosphoribosyltransferase (EC 2.4.2.10)
Orotate phosphoribosyltransferase (EC 2.4.2.10)
codB
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -197
score = 37.75
sequence = TAGTACCTTTAAAAT...

Gene: CBO2073: Cytosine/purine/uracil/thiamine/allantoin permease family protein
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs

Gene: Clos_2458: Cytosine/purine/uracil/thiamine/allantoin permease family protein
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
*
Clostridium butyricum 5521

Site:
position = -231
score = 29.84
sequence = AGTCCTTTAAGTTAT...

Gene: CBY_1339: Cytosine/purine/uracil/thiamine/allantoin permease family protein
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Cytosine/purine/uracil/thiamine/allantoin permease family protein
codA
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88

Gene: CTC01883: Cytosine deaminase (EC 3.5.4.1)
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2072: Cytosine deaminase (EC 3.5.4.1)
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124

Gene: CPF_0750: Cytosine deaminase (EC 3.5.4.1)
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs

Gene: Clos_2457: Cytosine deaminase (EC 3.5.4.1)
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521

Gene: CBY_1340: Cytosine deaminase (EC 3.5.4.1)
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Cytosine deaminase (EC 3.5.4.1)
pyrP
 
Clostridium kluyveri DSM 555

Gene: CKL_1200: Uracil permease
 
Clostridium sp. SS2/1
*
Clostridium cellulolyticum H10

Site:
position = -202
score = 59.58
sequence = AAACTTTTAAATTAG...

Gene: Ccel_0485: Uracil permease
 
Clostridium phytofermentans ISDg

Gene: null: Uracil permease
*
Clostridium tetani E88

Site:
position = -21
score = 30.24
sequence = ATATACTTTTAAATT...

Gene: CTC01612: Uracil permease
*
Clostridium acetobutylicum ATCC 824

Site:
position = -47
score = 35.94
sequence = GAGGTACTTTTAATA...

Gene: CAC2112: Uracil permease
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -44
score = 27.26
sequence = GCATCTTTTAAAATA...

Gene: CBO1479: Uracil permease
*
Clostridium novyi NT

Site:
position = -215
score = 55.44
sequence = GATAATCTTTAATAC...

Site:
position = -86
score = 43.77
sequence = GATAACTTTTTAAAT...

Gene: NT01CX_0192: Uracil permease
*2
Clostridium perfringens ATCC 13124

Site:
position = -207
score = 30.58
sequence = ACTATTCTTTAAAGA...

Site:
position = -84
score = 38.13
sequence = TTTACCTTTTTAAAT...

Gene: CPF_1422: Uracil permease

Site:
position = -47
score = 26.12
sequence = AAACTTTTAATTTAG...

Gene: CPF_1756: Uracil permease
 
Clostridium difficile 630

Gene: CD2594: Uracil permease
*
Clostridium beijerincki NCIMB 8052

Site:
position = -38
score = 29.37
sequence = TTTTAATTTAGTTCA...

Gene: Cbei_1715: Uracil permease
*3
Clostridium sp. OhILAs

Gene: Clos_0576: Uracil permease

Gene: Clos_0867: Uracil permease

Site:
position = -96
score = 41.33
sequence = TAATACCTTTAAATC...

Site:
position = -241
score = 54.81
sequence = ATAAATCTTTAATGC...

Gene: Clos_1951: Uracil permease
 
Clostridium sp. L2-50

Gene: CLOL250_02659: Uracil permease
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_02483: Uracil permease
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753

Gene: CLOLEP_02867: Uracil permease
 
Clostridium hiranonis DSM 13275
*2
Clostridium butyricum 5521

Site:
position = -79
score = 27.06
sequence = AGACATATTTTAATT...

Gene: CBY_3673: Uracil permease

Gene: CBY_1449: Uracil permease
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_00010: Uracil permease
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01468: Uracil permease
Uracil permease
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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