Regulog T-box(Asn) - Clostridiaceae
Regulator type: | RNA regulatory element |
Name: | T-box |
RFAM: | RF00230 |
Regulation mode: | |
Biological process: | Amino acid metabolism |
Effector: | Asn-tRNA |
Phylum: | Firmicutes |

Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - T-box
- By effector - Asn-tRNA
- By pathway - Amino acid metabolism
Genome | Genes | Operons |
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Clostridium kluyveri DSM 555 | 2 | 2 |
Clostridium sp. SS2/1 | 1 | 1 |
Clostridium cellulolyticum H10 | ||
Clostridium phytofermentans ISDg | 3 | 1 |
Clostridium tetani E88 | 2 | 2 |
Clostridium acetobutylicum ATCC 824 | 4 | 1 |
Clostridium botulinum A str. ATCC 3502 | 1 | 1 |
Clostridium novyi NT | 1 | 1 |
Clostridium perfringens ATCC 13124 | 2 | 2 |
Clostridium difficile 630 | 2 | 2 |
Clostridium beijerincki NCIMB 8052 | 1 | 1 |
Clostridium sp. OhILAs | 1 | 1 |
Clostridium sp. L2-50 | 1 | 1 |
Clostridium scindens ATCC 35704 | 5 | 1 |
Clostridium nexile DSM 1787 | ||
Clostridium leptum DSM 753 | 3 | 1 |
Clostridium hiranonis DSM 13275 | 1 | 1 |
Clostridium butyricum 5521 | ||
Clostridium bolteae ATCC BAA-613 | 4 | 1 |
Clostridium bartlettii DSM 16795 | 6 | 3 |
Genes | Function | ||||||||||||||||||||
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CRON 1. | |||||||||||||||||||||
asnB |
*
Clostridium kluyveri DSM 555 Site: position = -428 score = 83.09 sequence = GAAAAGCTATGATGG... Gene: CKL_2310: Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) |
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Gene: CLONEX_00536: Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) |
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Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) |
CRON 2. | |||||||||||||||||||||
asnS |
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Clostridium kluyveri DSM 555 Site: position = -295 score = 101.7 sequence = ACTAAAAACTATGAT... Gene: CKL_0118: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: CLOSS21_02102: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: Ccel_2574: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: null: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
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Clostridium tetani E88 Site: position = -292 score = 103.9 sequence = TTTAAAGACTATGAT... Gene: CTC00143: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: CAC3260: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -301 score = 97.43 sequence = CAAAAACTATGAAGA... Gene: CBO0597: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
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Clostridium novyi NT Site: position = -315 score = 104.51 sequence = TAAAGATTATGAAGA... Gene: NT01CX_1233: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
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Clostridium perfringens ATCC 13124 Site: position = -305 score = 98.59 sequence = TATTTACTATGAAGA... Gene: CPF_2823: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
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Clostridium difficile 630 Site: position = -311 score = 119.57 sequence = GATAAATACTGTGAA... Gene: CD2245: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: Cbei_0076: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
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Clostridium sp. OhILAs Site: position = -479 score = 108.91 sequence = TTAAAAGACTGTGAA... Gene: Clos_2341: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
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Gene: CLONEX_03560: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: CLOLEP_02696: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
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Clostridium hiranonis DSM 13275 Site: position = -202 score = 124.32 sequence = TAAATGCAGTGAAAA... Gene: CLOHIR_00190: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: CBY_2231: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: CLOBOL_00752: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
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Clostridium bartlettii DSM 16795 Site: position = -387 score = 96.39 sequence = AACAAAGACTATGAA... Gene: CLOBAR_02614: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
CRON 3. | |||||||||||||||||||||
aspS2 |
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Clostridium phytofermentans ISDg Site: position = -442 score = 57.21 sequence = GAAAGGCAATGAAGG... Gene: null: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
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Clostridium acetobutylicum ATCC 824 Site: position = -310 score = 121.05 sequence = TAAAATTGCAGTGAA... Gene: CAC2979: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
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Clostridium beijerincki NCIMB 8052 Site: position = -383 score = 114.09 sequence = TATATGCAATGATGA... Gene: Cbei_2126: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
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Clostridium scindens ATCC 35704 Site: position = -345 score = 72.42 sequence = AACAAAAGCAATGAA... Gene: CLOSCI_03776: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
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Clostridium bolteae ATCC BAA-613 Site: position = -419 score = 56.02 sequence = CAACAGCAATGAAAG... Gene: CLOBOL_01137: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
*
Clostridium bartlettii DSM 16795 Site: position = -309 score = 95.78 sequence = AAAATGCAATGAAAA... Gene: CLOBAR_01754: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Aspartyl-tRNA synthetase (EC 6.1.1.12) |
CLOSCI_03775 |
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Gene: CLOSCI_03775: hypothetical protein |
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hypothetical protein |
gatC |
Gene: CKL_3472: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
Gene: CLOSS21_03119: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
Gene: Ccel_2435: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
Gene: null: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
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2
Clostridium acetobutylicum ATCC 824 Gene: CAC2978: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) Gene: CAC2671: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
Gene: CBO3267: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
Gene: NT01CX_0432: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
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Gene: Cbei_2127: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
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Gene: CLOL250_00668: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
Gene: CLOSCI_03774: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
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2
Clostridium butyricum 5521 Gene: CBY_3065: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) Gene: CBY_1199: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
Gene: CLOBOL_01138: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
Gene: CLOBAR_01755: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) |
gatA |
Gene: CKL_3471: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
Gene: CLOSS21_03120: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
Gene: Ccel_2436: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
Gene: null: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
Gene: CTC02393: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
2
Clostridium acetobutylicum ATCC 824 Gene: CAC2977: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) Gene: CAC2670: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
Gene: CBO3266: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
Gene: NT01CX_0431: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
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Gene: Cbei_2128: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
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Gene: CLOL250_00669: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
2
Clostridium scindens ATCC 35704 Gene: CLOSCI_03773: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) Gene: CLOSCI_03165: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
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Gene: CLOLEP_02148: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
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2
Clostridium butyricum 5521 Gene: CBY_3066: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) Gene: CBY_1198: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
Gene: CLOBOL_01139: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
Gene: CLOBAR_01756: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) |
gatB |
Gene: CKL_3470: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
Gene: CLOSS21_03121: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
Gene: Ccel_2437: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
Gene: null: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
Gene: CTC02392: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
2
Clostridium acetobutylicum ATCC 824 Gene: CAC2976: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) Gene: CAC2669: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
Gene: CBO3265: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
Gene: NT01CX_0430: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
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Gene: Cbei_2129: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
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Gene: CLOL250_00670: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
2
Clostridium scindens ATCC 35704 Gene: CLOSCI_03164: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) Gene: CLOSCI_03772: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
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Gene: CLOLEP_02149: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
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2
Clostridium butyricum 5521 Gene: CBY_3067: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) Gene: CBY_1197: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
Gene: CLOBOL_01140: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
Gene: CLOBAR_01757: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
aspS |
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Clostridium sp. SS2/1 Site: position = -370 score = 82.28 sequence = AATGGGCAATGACGG... Gene: CLOSS21_03157: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
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*
Clostridium sp. L2-50 Site: position = -288 score = 43.27 sequence = TGAAAAGGCGAAGAC... Site: position = -151 score = 41.34 sequence = GAGATGACCGGAAAA... Gene: CLOL250_01449: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: CLOSCI_03166: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
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Clostridium leptum DSM 753 Site: position = -463 score = 77.82 sequence = AAATGGCAACGATGG... Gene: CLOLEP_02147: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
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Aspartyl-tRNA synthetase (EC 6.1.1.12) |
CRON 4. | |||||||||||||||||||||
asnA |
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Gene: Ccel_2575: Aspartate--ammonia ligase (EC 6.3.1.1) |
Gene: null: Aspartate--ammonia ligase (EC 6.3.1.1) |
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Clostridium tetani E88 Site: position = -342 score = 108.84 sequence = AAAAGACAGTGATGG... Gene: CTC00781: Aspartate--ammonia ligase (EC 6.3.1.1) |
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Gene: CBO1504: Aspartate--ammonia ligase (EC 6.3.1.1) |
Gene: NT01CX_1288: Aspartate--ammonia ligase (EC 6.3.1.1) |
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Clostridium perfringens ATCC 13124 Site: position = -446 score = 98.05 sequence = ACAAAGCATTGATGG... Gene: CPF_2233: Aspartate--ammonia ligase (EC 6.3.1.1) |
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Clostridium difficile 630 Site: position = -306 score = 116.61 sequence = CTTAAAGACTTTGAA... Gene: CD2695: Aspartate--ammonia ligase (EC 6.3.1.1) |
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Gene: Clos_0232: Aspartate--ammonia ligase (EC 6.3.1.1) |
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Gene: CLONEX_00235: Aspartate--ammonia ligase (EC 6.3.1.1) |
Gene: CLOLEP_03232: Aspartate--ammonia ligase (EC 6.3.1.1) |
Gene: CLOHIR_01034: Aspartate--ammonia ligase (EC 6.3.1.1) |
Gene: CBY_2756: Aspartate--ammonia ligase (EC 6.3.1.1) |
Gene: CLOBOL_03297: Aspartate--ammonia ligase (EC 6.3.1.1) |
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Clostridium bartlettii DSM 16795 Site: position = -301 score = 105.02 sequence = TAAAAGCAATGAAGG... Gene: CLOBAR_00503: Aspartate--ammonia ligase (EC 6.3.1.1) |
Aspartate--ammonia ligase (EC 6.3.1.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |