Regulons of Clostridium phytofermentans ISDg

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
RNA	Cobalamin	Adenosylcobalamin	Cobalamin biosynthesis	8	4
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	1	1
RNA	GEMM_RNA_motif	Cyclic diguanylate	Second messenger response	4	2
RNA	L10_leader		Ribosome biogenesis	1	1
RNA	L20_leader		Ribosome biogenesis	1	1
RNA	Lysine	Lysine	Lysine biosynthesis	4	2
RNA	PreQ1	Pre-queuosine1	Queuosine biosynthesis	2	1
RNA	SAM	S-adenosylmethionine	Methionine biosynthesis	11	1
RNA	T-box(Ala)	Ala-tRNA	Amino acid metabolism	3	1
RNA	T-box(Asn)	Asn-tRNA	Amino acid metabolism	4	1
RNA	T-box(Cys)	Cys-tRNA	Amino acid metabolism	4	1
RNA	T-box(Gly)	Gly-tRNA	Amino acid metabolism	2	1
RNA	T-box(Ile)	Ile-tRNA	Amino acid metabolism	5	1
RNA	T-box(Leu)	Leu-tRNA	Amino acid metabolism	2	2
RNA	T-box(Met)	Met-tRNA	Amino acid metabolism	2	1
RNA	T-box(Phe)	Phe-tRNA	Amino acid metabolism	1	1
RNA	T-box(Pro)	Pro-tRNA	Amino acid metabolism	1	1
RNA	T-box(Ser)	Ser-tRNA	Amino acid metabolism	1	1
RNA	T-box(Thr)	Thr-tRNA	Amino acid metabolism	2	2
RNA	T-box(Trp)	Trp-tRNA	Amino acid metabolism	4	2
RNA	T-box(Tyr)	Tyr-tRNA	Amino acid metabolism	3	1
RNA	T-box(Val)	Val-tRNA	Amino acid metabolism	3	2
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	2	1
RNA	glmS	Glucosamine-6-phosphate	Amino sugar metabolism	1	1
RNA	ydaO-yuaA		Cell wall metabolism; Osmotic stress response	2	1
RNA	yybP-ykoY			5	3

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --