Regulog T-box(Phe) - Clostridiaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Phe-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - T-box
By effector - Phe-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Clostridium kluyveri DSM 555	2	1
Clostridium sp. SS2/1	2	1
Clostridium cellulolyticum H10	2	1
Clostridium phytofermentans ISDg	2	1
Clostridium tetani E88	3	2
Clostridium acetobutylicum ATCC 824	2	1
Clostridium botulinum A str. ATCC 3502	2	1
Clostridium novyi NT	2	1
Clostridium perfringens ATCC 13124	2	1
Clostridium difficile 630	2	1
Clostridium beijerincki NCIMB 8052	2	1
Clostridium sp. OhILAs	2	1
Clostridium sp. L2-50	2	1
Clostridium scindens ATCC 35704	2	1
Clostridium nexile DSM 1787	2	1
Clostridium leptum DSM 753	2	1
Clostridium hiranonis DSM 13275	2	1
Clostridium butyricum 5521	2	1
Clostridium bolteae ATCC BAA-613	2	1
Clostridium bartlettii DSM 16795	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																					Function

CRON 1.
pheS	* Clostridium kluyveri DSM 555 Site: position = -314 score = 104.46 sequence = TTAGAATACTGTGAA... Gene: CKL_3192: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium sp. SS2/1 Site: position = -313 score = 90.54 sequence = TAAAGGCATTGATGG... Gene: CLOSS21_00170: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium cellulolyticum H10 Site: position = -292 score = 130.28 sequence = CAAAAGCAATGATGG... Gene: Ccel_1442: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium phytofermentans ISDg Site: position = -499 score = 86.36 sequence = GAAAAAGGCTATGAA... Gene: null: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium tetani E88 Site: position = -262 score = 97.51 sequence = ATAGTAAACTATGAC... Gene: CTC02278: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium acetobutylicum ATCC 824 Site: position = -270 score = 116.15 sequence = AATAAAAACATTGAA... Gene: CAC2357: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium botulinum A str. ATCC 3502 Site: position = -290 score = 114.95 sequence = ATATTAAACTATGAT... Gene: CBO3131: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium novyi NT Site: position = -273 score = 112.47 sequence = TTTAAACTATGATAG... Gene: NT01CX_1767: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium perfringens ATCC 13124 Site: position = -397 score = 124.52 sequence = GATAAAAACATTGAT... Gene: CPF_2140: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium difficile 630 Site: position = -274 score = 117.1 sequence = TAAATGCAATGAAAG... Gene: CD0699: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium beijerincki NCIMB 8052 Site: position = -339 score = 113.6 sequence = GAAAAACTGTGAATG... Gene: Cbei_1573: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium sp. OhILAs Site: position = -397 score = 118.18 sequence = AACAAAAGCGTAGAA... Gene: Clos_1972: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium sp. L2-50 Site: position = -296 score = 84.9 sequence = AGAAGACGTTGAAGA... Gene: CLOL250_00565: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium scindens ATCC 35704 Site: position = -279 score = 99.74 sequence = AAAAAGCAATGACCG... Gene: CLOSCI_03569: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium nexile DSM 1787 Site: position = -283 score = 110.78 sequence = CAAAAAGGCATGGAA... Gene: CLONEX_03195: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium leptum DSM 753 Site: position = -317 score = 117.28 sequence = AGAGAACGCAGTGAA... Gene: CLOLEP_02088: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium hiranonis DSM 13275 Site: position = -318 score = 113.85 sequence = AATTAATGTTGATAG... Gene: CLOHIR_01898: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium butyricum 5521 Site: position = -368 score = 95.22 sequence = TAAAAATTGTGATTG... Gene: CBY_3151: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium bolteae ATCC BAA-613 Site: position = -276 score = 90.43 sequence = ATCAAAAGCGATGAA... Gene: CLOBOL_02009: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Clostridium bartlettii DSM 16795 Site: position = -303 score = 129.01 sequence = AGAATTTACGGTGAA... Gene: CLOBAR_01296: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
pheT	Clostridium kluyveri DSM 555 Gene: CKL_3191: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium sp. SS2/1 Gene: CLOSS21_00171: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium cellulolyticum H10 Gene: Ccel_1443: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium phytofermentans ISDg Gene: null: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium tetani E88 Gene: CTC02277: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium acetobutylicum ATCC 824 Gene: CAC2356: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium botulinum A str. ATCC 3502 Gene: CBO3130: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium novyi NT Gene: NT01CX_1768: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium perfringens ATCC 13124 Gene: CPF_2139: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium difficile 630 Gene: CD0700: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium beijerincki NCIMB 8052 Gene: Cbei_1574: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium sp. OhILAs Gene: Clos_1971: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium sp. L2-50 Gene: CLOL250_00566: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium scindens ATCC 35704 Gene: CLOSCI_03570: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium nexile DSM 1787 Gene: CLONEX_03194: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium leptum DSM 753 Gene: CLOLEP_02087: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium hiranonis DSM 13275 Gene: CLOHIR_01899: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	2 Clostridium butyricum 5521 Gene: CBY_3152: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) Gene: CBY_3152: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_02008: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Clostridium bartlettii DSM 16795 Gene: CLOBAR_01295: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)

CRON 2.
brnQ1	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	* Clostridium tetani E88 Site: position = -360 score = 107.4 sequence = TAAAAATTATGATGG... Site: position = -121 score = 23.01 sequence = TAGGTATTTTTTATT... Gene: CTC00787: branched-chain amino acid transport system II carrier protein	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	branched-chain amino acid transport system II carrier protein