Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog T-box(Phe) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Phe-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium kluyveri DSM 555 2 1
Clostridium sp. SS2/1 2 1
Clostridium cellulolyticum H10 2 1
Clostridium phytofermentans ISDg 2 1
Clostridium tetani E88 3 2
Clostridium acetobutylicum ATCC 824 2 1
Clostridium botulinum A str. ATCC 3502 2 1
Clostridium novyi NT 2 1
Clostridium perfringens ATCC 13124 2 1
Clostridium difficile 630 2 1
Clostridium beijerincki NCIMB 8052 2 1
Clostridium sp. OhILAs 2 1
Clostridium sp. L2-50 2 1
Clostridium scindens ATCC 35704 2 1
Clostridium nexile DSM 1787 2 1
Clostridium leptum DSM 753 2 1
Clostridium hiranonis DSM 13275 2 1
Clostridium butyricum 5521 2 1
Clostridium bolteae ATCC BAA-613 2 1
Clostridium bartlettii DSM 16795 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pheS
*
Clostridium kluyveri DSM 555

Site:
position = -314
score = 104.46
sequence = TTAGAATACTGTGAA...

Gene: CKL_3192: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium sp. SS2/1

Site:
position = -313
score = 90.54
sequence = TAAAGGCATTGATGG...

Gene: CLOSS21_00170: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium cellulolyticum H10

Site:
position = -292
score = 130.28
sequence = CAAAAGCAATGATGG...

Gene: Ccel_1442: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium phytofermentans ISDg

Site:
position = -499
score = 86.36
sequence = GAAAAAGGCTATGAA...

Gene: null: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium tetani E88

Site:
position = -262
score = 97.51
sequence = ATAGTAAACTATGAC...

Gene: CTC02278: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium acetobutylicum ATCC 824

Site:
position = -270
score = 116.15
sequence = AATAAAAACATTGAA...

Gene: CAC2357: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -290
score = 114.95
sequence = ATATTAAACTATGAT...

Gene: CBO3131: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium novyi NT

Site:
position = -273
score = 112.47
sequence = TTTAAACTATGATAG...

Gene: NT01CX_1767: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium perfringens ATCC 13124

Site:
position = -397
score = 124.52
sequence = GATAAAAACATTGAT...

Gene: CPF_2140: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium difficile 630

Site:
position = -274
score = 117.1
sequence = TAAATGCAATGAAAG...

Gene: CD0699: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium beijerincki NCIMB 8052

Site:
position = -339
score = 113.6
sequence = GAAAAACTGTGAATG...

Gene: Cbei_1573: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium sp. OhILAs

Site:
position = -397
score = 118.18
sequence = AACAAAAGCGTAGAA...

Gene: Clos_1972: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium sp. L2-50

Site:
position = -296
score = 84.9
sequence = AGAAGACGTTGAAGA...

Gene: CLOL250_00565: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium scindens ATCC 35704

Site:
position = -279
score = 99.74
sequence = AAAAAGCAATGACCG...

Gene: CLOSCI_03569: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium nexile DSM 1787

Site:
position = -283
score = 110.78
sequence = CAAAAAGGCATGGAA...

Gene: CLONEX_03195: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium leptum DSM 753

Site:
position = -317
score = 117.28
sequence = AGAGAACGCAGTGAA...

Gene: CLOLEP_02088: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium hiranonis DSM 13275

Site:
position = -318
score = 113.85
sequence = AATTAATGTTGATAG...

Gene: CLOHIR_01898: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium butyricum 5521

Site:
position = -368
score = 95.22
sequence = TAAAAATTGTGATTG...

Gene: CBY_3151: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium bolteae ATCC BAA-613

Site:
position = -276
score = 90.43
sequence = ATCAAAAGCGATGAA...

Gene: CLOBOL_02009: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Clostridium bartlettii DSM 16795

Site:
position = -303
score = 129.01
sequence = AGAATTTACGGTGAA...

Gene: CLOBAR_01296: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
pheT
 
Clostridium kluyveri DSM 555

Gene: CKL_3191: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium sp. SS2/1

Gene: CLOSS21_00171: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium cellulolyticum H10

Gene: Ccel_1443: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium phytofermentans ISDg

Gene: null: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium tetani E88

Gene: CTC02277: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2356: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3130: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium novyi NT

Gene: NT01CX_1768: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium perfringens ATCC 13124

Gene: CPF_2139: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium difficile 630

Gene: CD0700: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1574: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium sp. OhILAs

Gene: Clos_1971: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium sp. L2-50

Gene: CLOL250_00566: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_03570: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium nexile DSM 1787

Gene: CLONEX_03194: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium leptum DSM 753

Gene: CLOLEP_02087: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01899: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 2
Clostridium butyricum 5521

Gene: CBY_3152: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)

Gene: CBY_3152: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02008: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01295: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
CRON 2.
brnQ1
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg
*
Clostridium tetani E88

Site:
position = -360
score = 107.4
sequence = TAAAAATTATGATGG...

Site:
position = -121
score = 23.01
sequence = TAGGTATTTTTTATT...

Gene: CTC00787: branched-chain amino acid transport system II carrier protein
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
branched-chain amino acid transport system II carrier protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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