Regulog T-box(Gly) - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Gly-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - T-box
- By effector - Gly-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 1 | 1 |
| Clostridium sp. SS2/1 | ||
| Clostridium cellulolyticum H10 | ||
| Clostridium phytofermentans ISDg | 1 | 1 |
| Clostridium tetani E88 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | 1 | 1 |
| Clostridium botulinum A str. ATCC 3502 | 1 | 1 |
| Clostridium novyi NT | 1 | 1 |
| Clostridium perfringens ATCC 13124 | 1 | 1 |
| Clostridium difficile 630 | ||
| Clostridium beijerincki NCIMB 8052 | 1 | 1 |
| Clostridium sp. OhILAs | 1 | 1 |
| Clostridium sp. L2-50 | ||
| Clostridium scindens ATCC 35704 | ||
| Clostridium nexile DSM 1787 | ||
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | ||
| Clostridium butyricum 5521 | 1 | 1 |
| Clostridium bolteae ATCC BAA-613 | ||
| Clostridium bartlettii DSM 16795 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| glyS |
*
Clostridium kluyveri DSM 555 Site: position = -239 score = 73.51 sequence = AGGTTGCTTTGATAA... Gene: CKL_0180: Glycyl-tRNA synthetase (EC 6.1.1.14) |
Gene: CLOSS21_02219: Glycyl-tRNA synthetase (EC 6.1.1.14) |
Gene: Ccel_1789: Glycyl-tRNA synthetase (EC 6.1.1.14) |
*2
Clostridium phytofermentans ISDg Gene: null: Glycyl-tRNA synthetase (EC 6.1.1.14) Site: position = -394 score = 104.03 sequence = AAACAGCGTTGATAA... Gene: null: Glycyl-tRNA synthetase (EC 6.1.1.14) |
*
Clostridium tetani E88 Site: position = -223 score = 80.98 sequence = ATACCACGATGATAG... Gene: CTC00212: Glycyl-tRNA synthetase (EC 6.1.1.14) |
*
Clostridium acetobutylicum ATCC 824 Site: position = -217 score = 73.25 sequence = TATCTATACAATGAC... Gene: CAC3195: Glycyl-tRNA synthetase (EC 6.1.1.14) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -220 score = 92.47 sequence = ATAATATACGATGAT... Gene: CBO3517: Glycyl-tRNA synthetase (EC 6.1.1.14) |
*
Clostridium novyi NT Site: position = -223 score = 92.18 sequence = AAAACACAATGACAA... Gene: NT01CX_1048: Glycyl-tRNA synthetase (EC 6.1.1.14) |
*
Clostridium perfringens ATCC 13124 Site: position = -339 score = 91.18 sequence = AATATGTACTATGAT... Gene: CPF_2779: Glycyl-tRNA synthetase (EC 6.1.1.14) |
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -223 score = 86.75 sequence = TACACATGTTGAAAA... Gene: Cbei_0106: Glycyl-tRNA synthetase (EC 6.1.1.14) |
*
Clostridium sp. OhILAs Site: position = -385 score = 74.64 sequence = ATATTGCTATGATGA... Gene: Clos_1255: Glycyl-tRNA synthetase (EC 6.1.1.14) |
Gene: CLOL250_02737: Glycyl-tRNA synthetase (EC 6.1.1.14) |
Gene: CLOSCI_01575: Glycyl-tRNA synthetase (EC 6.1.1.14) |
Gene: CLONEX_03650: Glycyl-tRNA synthetase (EC 6.1.1.14) |
Gene: CLOLEP_00119: Glycyl-tRNA synthetase (EC 6.1.1.14) |
|
*
Clostridium butyricum 5521 Site: position = -216 score = 80.78 sequence = AAAATGCATGTTGAT... Gene: CBY_2185: Glycyl-tRNA synthetase (EC 6.1.1.14) |
Gene: CLOBOL_05766: Glycyl-tRNA synthetase (EC 6.1.1.14) |
|
Glycyl-tRNA synthetase (EC 6.1.1.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |