Regulons of Clostridium bartlettii DSM 16795

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	BirA	Biotin	Biotin biosynthesis	1	1
TF	CD1503		Multidrug resistance; Multidrug efflux	1	1
TF	CcpA	HPr, phosphocarrier protein	Carbon catabolism; Carbohydrate metabolism	21	14
TF	Fur	Iron ion, (Fe2+)	Iron homeostasis	6	7
TF	HrcA	Heat shock	Heat shock response	3	4
TF	IscR	Iron-sulfur cluster redox state	Iron-sulfur cluster biogenesis	1	2
TF	LexA	DNA damage	SOS response	4	3
TF	NiaR	Niacin	NAD biosynthesis	3	6
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	3	6
TF	Rex	NADH	Energy metabolism	10	14
TF	YhcF		Multidrug resistance; Multidrug efflux	1	1
RNA	Cobalamin	Adenosylcobalamin	Cobalamin biosynthesis	13	4
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	3	3
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	3	3
RNA	Glycine	Glycine	Glycine metabolism	7	3
RNA	L10_leader		Ribosome biogenesis	1	1
RNA	L19_leader		Ribosome biogenesis	1	1
RNA	L20_leader		Ribosome biogenesis	1	1
RNA	L21_leader		Ribosome biogenesis	1	1
RNA	Lysine	Lysine	Lysine biosynthesis	6	3
RNA	MOCO_RNA_motif	Molybdenum	Molybdopterin biosynthesis; Molybdenum homeostasis	2	1
RNA	Purine	Adenine; Guanine	Purine metabolism	7	2
RNA	PyrR	PyrR	Pyrimidine metabolism	4	3
RNA	SAM	S-adenosylmethionine	Methionine biosynthesis	8	4
RNA	T-box(Ala)	Ala-tRNA	Amino acid metabolism	1	1
RNA	T-box(Arg)	Arg-tRNA	Amino acid metabolism	6	5
RNA	T-box(Asn)	Asn-tRNA	Amino acid metabolism	3	3
RNA	T-box(Ile)	Ile-tRNA	Amino acid metabolism	5	2
RNA	T-box(Leu)	Leu-tRNA	Amino acid metabolism	1	1
RNA	T-box(Met)	Met-tRNA	Amino acid metabolism	1	1
RNA	T-box(Phe)	Phe-tRNA	Amino acid metabolism	1	1
RNA	T-box(Pro)	Pro-tRNA	Amino acid metabolism	1	1
RNA	T-box(Thr)	Thr-tRNA	Amino acid metabolism	1	1
RNA	T-box(Trp)	Trp-tRNA	Amino acid metabolism	3	3
RNA	T-box(Tyr)	Tyr-tRNA	Amino acid metabolism	2	2
RNA	T-box(Val)	Val-tRNA	Amino acid metabolism	3	1
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	4	2
RNA	glmS	Glucosamine-6-phosphate	Amino sugar metabolism	1	1
RNA	ykkC-yxkD		Multidrug resistance	1	1
RNA	yybP-ykoY			4	2

	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulons of Clostridium bartlettii DSM 16795

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --