Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CcpA in Clostridium bartlettii DSM 16795

Properties
Regulator type: Transcription factor
TF locus tag: CLOBAR_00799
Regulator family: LacI
Regulation mode: repressor (activator)
Biological process: Carbon catabolism; Carbohydrate metabolism
Effector: HPr, phosphocarrier protein
Regulog: CcpA - Clostridia-2
Statistics of regulated genes:
- Genes 20
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 113 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -75
Score: 4.1
Sequence: GGAAAAAGGTTTATAT
Locus tag: CLOBAR_01893
Name: brnQ
Funciton: Branched-chain amino acid transport system carrier protein
CLOBAR_01893
brnQ
Branched-chain amino acid transport system carrier protein
Position: -39
Score: 3.8
Sequence: AAAATAAAATTTTTAT
Locus tag: CLOBAR_02362
Name: ptsH
Funciton: Phosphocarrier protein of PTS system
CLOBAR_02362
ptsH
Phosphocarrier protein of PTS system
Position: -51
Score: 4
Sequence: GAGAAAACATATTGAA
Position: -16
Score: 4
Sequence: AAAATAAAAATATCTT
Locus tag: CLOBAR_00380
Name: cggR
Funciton: Central glycolytic genes regulator
CLOBAR_00380
cggR
Central glycolytic genes regulator
Position: -71
Score: 3.9
Sequence: TTTAAATAATTTTCTT
Locus tag: CLOBAR_02757
Name: ung
Funciton: Uracil-DNA glycosylase, family 1
CLOBAR_02757
ung
Uracil-DNA glycosylase, family 1
Position: 69
Score: 4.6
Sequence: AAAAAAAGGTTATCTA
Locus tag: CLOBAR_00039
Name: rlmH
Funciton: LSU m3Psi1915 methyltransferase RlmH
CLOBAR_00039
rlmH
LSU m3Psi1915 methyltransferase RlmH
Position: 2
Score: 3.8
Sequence: GATAAAATGTTATTTA
Locus tag: CLOBAR_01234
Name: spoIIAA
Funciton: anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV
Locus tag: CLOBAR_01233
Name: spoIIAB
Funciton: Anti-sigma F factor (EC 2.7.11.1)
Locus tag: CLOBAR_01232
Name: sigF
Funciton: RNA polymerase sporulation specific sigma factor SigF
CLOBAR_01234
spoIIAA
anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV
CLOBAR_01233
spoIIAB
Anti-sigma F factor (EC 2.7.11.1)
CLOBAR_01232
sigF
RNA polymerase sporulation specific sigma factor SigF
Position: -79
Score: 4.2
Sequence: TGAAAATGGTTTTCTA
Position: -60
Score: 4.7
Sequence: TTGAAAAGATTTTCAT
Locus tag: CLOBAR_02382
Name: tagK
Funciton: 1-phosphofructokinase (EC 2.7.1.56)
Locus tag: CLOBAR_02383
Name: tagT
Funciton: PTS system, fructose-specific IIBC component (EC 2.7.1.69)
Locus tag: CLOBAR_02384
Name: gatY
Funciton: Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40)
CLOBAR_02382
tagK
1-phosphofructokinase (EC 2.7.1.56)
CLOBAR_02383
tagT
PTS system, fructose-specific IIBC component (EC 2.7.1.69)
CLOBAR_02384
gatY
Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40)
Position: -208
Score: 4.4
Sequence: AGGAAAAATATATCAT
Position: -172
Score: 4.2
Sequence: GTGATATCGTTTTCAA
Locus tag: CLOBAR_00319
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
CLOBAR_00319
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -130
Score: 3.9
Sequence: AGTAAATTGTATTCAT
Locus tag: CLOBAR_02247
Name: spo0A
Funciton: Stage 0 sporulation two-component response regulator (Spo0A)
CLOBAR_02247
spo0A
Stage 0 sporulation two-component response regulator (Spo0A)
Position: -100
Score: 3.7
Sequence: GATAAATAATTAACAA
Locus tag: CLOBAR_01505
Name: rnfC
Funciton: Electron transport complex protein RnfC
Locus tag: CLOBAR_01504
Name: rnfD
Funciton: Electron transport complex protein RnfD
Locus tag: CLOBAR_01503
Name: rnfG
Funciton: Electron transport complex protein RnfG
Locus tag: CLOBAR_01502
Name: rnfE
Funciton: Electron transport complex protein RnfE
Locus tag: CLOBAR_01501
Name: rnfA
Funciton: Electron transport complex protein RnfA
Locus tag: CLOBAR_01500
Name: rnfB
Funciton: Electron transport complex protein RnfB
CLOBAR_01505
rnfC
Electron transport complex protein RnfC
CLOBAR_01504
rnfD
Electron transport complex protein RnfD
CLOBAR_01503
rnfG
Electron transport complex protein RnfG
CLOBAR_01502
rnfE
Electron transport complex protein RnfE
CLOBAR_01501
rnfA
Electron transport complex protein RnfA
CLOBAR_01500
rnfB
Electron transport complex protein RnfB
Position: -114
Score: 4.4
Sequence: AGGAAAAGGGTTGCAT
Locus tag: CLOBAR_00645
Name: licB
Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
CLOBAR_00645
licB
PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise