Regulog CcpA - Clostridia-2
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism; Carbohydrate metabolism |
| Effector: | HPr, phosphocarrier protein |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - CcpA
- By taxonomy - Clostridia-2
- By TF family - LacI
- By effector - HPr, phosphocarrier protein
- By pathway - Carbon catabolism
- By pathway - Carbohydrate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium hiranonis DSM 13275 | 22 | 13 |
| Clostridium difficile 630 | 123 | 59 |
| Clostridium bartlettii DSM 16795 | 20 | 11 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| rnfC |
*
Clostridium hiranonis DSM 13275 Site: position = -190 score = 3.61101 sequence = TAGAAACATATATCTT Gene: CLOHIR_01952: Electron transport complex protein RnfC |
*
Clostridium difficile 630 Site: position = -184 score = 3.8408 sequence = ATGAAAAGGATTGTTT Gene: CD1137: Electron transport complex protein RnfC |
*
Clostridium bartlettii DSM 16795 Site: position = -100 score = 3.66218 sequence = GATAAATAATTAACAA Gene: CLOBAR_01505: Electron transport complex protein RnfC |
Electron transport complex protein RnfC |
| rnfD |
Gene: CLOHIR_01953: Electron transport complex protein RnfD |
Gene: CD1138: Electron transport complex protein RnfD |
Gene: CLOBAR_01504: Electron transport complex protein RnfD |
Electron transport complex protein RnfD |
| rnfG |
Gene: CLOHIR_01954: Electron transport complex protein RnfG |
Gene: CD1139: Electron transport complex protein RnfG |
Gene: CLOBAR_01503: Electron transport complex protein RnfG |
Electron transport complex protein RnfG |
| rnfE |
Gene: CLOHIR_01955: Electron transport complex protein RnfE |
Gene: CD1140: Electron transport complex protein RnfE |
Gene: CLOBAR_01502: Electron transport complex protein RnfE |
Electron transport complex protein RnfE |
| rnfA |
Gene: CLOHIR_01956: Electron transport complex protein RnfA |
Gene: CD1141: Electron transport complex protein RnfA |
Gene: CLOBAR_01501: Electron transport complex protein RnfA |
Electron transport complex protein RnfA |
| rnfB |
Gene: CLOHIR_01957: Electron transport complex protein RnfB |
Gene: CD1142: Electron transport complex protein RnfB |
Gene: CLOBAR_01500: Electron transport complex protein RnfB |
Electron transport complex protein RnfB |
| CRON 2. | ||||
| hadA |
|
*
Clostridium difficile 630 Site: position = -11 score = 4.85451 sequence = AGGAAAACGTTATGCT Gene: CD0395: Hydroxyproline dehydratase putative |
|
Hydroxyproline dehydratase putative |
| hadI |
|
Gene: CD0396: Benzoyl-CoA reductase subunit BadG (EC 1.3.99.15) |
|
Benzoyl-CoA reductase subunit BadG (EC 1.3.99.15) |
| hadB |
|
Gene: CD0397: Benzoyl-CoA reductase subunit BadE (EC 1.3.99.15) |
|
Benzoyl-CoA reductase subunit BadE (EC 1.3.99.15) |
| hadC |
|
Gene: CD0398: Subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase |
|
Subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase |
| acdB |
|
Gene: CD0399: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
|
Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
| etfB1 |
|
Gene: CD0400: Electron transfer flavoprotein, beta subunit |
|
Electron transfer flavoprotein, beta subunit |
| etfA1 |
|
Gene: CD0401: Electron transfer flavoprotein, alpha subunit |
|
Electron transfer flavoprotein, alpha subunit |
| CRON 3. | ||||
| CD1536 |
|
*
Clostridium difficile 630 Site: position = 232 score = 4.25724 sequence = AAGAAAACGATTTTGT Gene: CD1536: putative electron-transfer protein |
|
putative electron-transfer protein |
| aspB |
*
Clostridium hiranonis DSM 13275 Site: position = 232 score = 4.86012 sequence = AGGAAAACGATTTCGT Gene: CLOHIR_01291: Pyridine nucleotide-disulphide oxidoreductase family protein |
Gene: CD1537: Pyridine nucleotide-disulphide oxidoreductase family protein |
|
Pyridine nucleotide-disulphide oxidoreductase family protein |
| CRON 4. | ||||
| CD1768 |
|
*
Clostridium difficile 630 Site: position = -51 score = 5.07594 sequence = GAGAAAAGGTTTTGTT Gene: CD1768: hypothetical protein |
|
hypothetical protein |
| CRON 5. | ||||
| CD1586 |
|
*
Clostridium difficile 630 Site: position = 112 score = 5.10434 sequence = TAGAAAAGGTTATCAT Gene: CD1586: hypothetical protein |
|
hypothetical protein |
| CD1587 |
|
Gene: CD1587: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) |
|
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) |
| CD1588 |
|
Gene: CD1588: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) |
|
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) |
| CRON 6. | ||||
| spoVS |
|
*
Clostridium difficile 630 Site: position = -143 score = 4.41326 sequence = AAATAAAGGTTTTCTT Gene: CD1935: Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS) |
Gene: CLOBAR_01875: Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS) |
Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS) |
| CRON 7. | ||||
| CD1893 |
|
*
Clostridium difficile 630 Site: position = -153 score = 4.30997 sequence = TAGAAATCGTTTAATT Site: position = -76 score = 5.06522 sequence = TATAAAACGTTTTCTT Gene: CD1893: COG3760, similarity to aminoacyl-tRNA editing enzymes YbaK, ProX |
|
COG3760, similarity to aminoacyl-tRNA editing enzymes YbaK, ProX |
| CRON 8. | ||||
| CD1385 |
|
*
Clostridium difficile 630 Site: position = -110 score = 4.40318 sequence = AAGAAAGCGTTTTGAA Gene: CD1385: Transporter |
|
Transporter |
| CD1386 |
|
*
Clostridium difficile 630 Site: position = -146 score = 4.2291 sequence = AAGAAAAGATATTGTT Gene: CD1386: Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) |
|
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) |
| CD1387 |
|
*
Clostridium difficile 630 Site: position = -127 score = 4.19471 sequence = AAGAACAGATTTTGCT Site: position = -55 score = 3.8618 sequence = TCGAAAAAAATAACTT Gene: CD1387: Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) |
|
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) |
| CRON 9. | ||||
| CD1477 |
|
*
Clostridium difficile 630 Site: position = -51 score = 4.66451 sequence = AAGATAACGATTGCTT Gene: CD1477: hypothetical protein |
Gene: CLOBAR_02835: hypothetical protein |
hypothetical protein |
| feoA1 |
|
Gene: CD1478: Ferrous iron transport protein A |
Gene: CLOBAR_02834: Ferrous iron transport protein A |
Ferrous iron transport protein A |
| feoB1 |
|
Gene: CD1479: Ferrous iron transport protein B |
Gene: CLOBAR_02833: Ferrous iron transport protein B |
Ferrous iron transport protein B |
| CRON 10. | ||||
| spo0A |
|
*
Clostridium difficile 630 Site: position = -16 score = 3.88536 sequence = AAGAAGATGTTTTTTA Site: position = -41 score = 4.33111 sequence = TGTAAAAAGTTTAGTT Site: position = -134 score = 3.84699 sequence = ATTAAAAAATTTTATT Gene: CD1214: Stage 0 sporulation two-component response regulator (Spo0A) |
*
Clostridium bartlettii DSM 16795 Site: position = -130 score = 3.91705 sequence = AGTAAATTGTATTCAT Gene: CLOBAR_02247: Stage 0 sporulation two-component response regulator (Spo0A) |
Stage 0 sporulation two-component response regulator (Spo0A) |
| CRON 11. | ||||
| CD0530 |
|
*
Clostridium difficile 630 Site: position = 11 score = 4.13444 sequence = TAAAAAACATTTTATT Site: position = -79 score = 4.06643 sequence = AGGAAAACGTATTATA Gene: CD0530: Membrane protein, putative |
|
Membrane protein, putative |
| CD0529 |
|
Gene: CD0529: Conserved protein |
|
Conserved protein |
| CD0528 |
|
Gene: CD0528: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) |
|
N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) |
| CRON 12. | ||||
| gapN |
|
*
Clostridium difficile 630 Site: position = -75 score = 4.12108 sequence = AAAGAAATGTTTACAT Site: position = -123 score = 4.79517 sequence = AGAAAAACGTTAACTT Gene: CD0580: Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9) |
|
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9) |
| CRON 13. | ||||
| CD1321 |
|
*
Clostridium difficile 630 Site: position = 25 score = 4.76644 sequence = AGGAAATAGTTAACTT Gene: CD1321: hypothetical protein |
Gene: CLOBAR_02153: hypothetical protein |
hypothetical protein |
| dapG |
Gene: CLOHIR_01230: Aspartokinase (EC 2.7.2.4) |
*
Clostridium difficile 630 Site: position = -124 score = 4.10962 sequence = AGAAAAAGGATTTTTT Gene: CD1322: Aspartokinase (EC 2.7.2.4) |
Gene: CLOBAR_02152: Aspartokinase (EC 2.7.2.4) |
Aspartokinase (EC 2.7.2.4) |
| CRON 14. | ||||
| eutH |
|
*
Clostridium difficile 630 Site: position = -75 score = 4.15179 sequence = GGGAAAACGATACCAA Gene: CD0742: Ethanolamine permease |
|
Ethanolamine permease |
| CRON 15. | ||||
| rbsR |
|
*
Clostridium difficile 630 Site: position = -27 score = 4.33882 sequence = AGTAAAACGGTTTCCT Gene: CD0298: Ribose operon repressor |
|
Ribose operon repressor |
| rbsK |
|
Gene: CD0299: Ribokinase (EC 2.7.1.15) |
|
Ribokinase (EC 2.7.1.15) |
| rbsB |
|
Gene: CD0300: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) |
|
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) |
| rbsA |
|
Gene: CD0301: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) |
|
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) |
| rbsC |
|
Gene: CD0302: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) |
|
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) |
| CRON 16. | ||||
| CD0201 |
|
*
Clostridium difficile 630 Site: position = 78 score = 4.50666 sequence = GAGAAAATGTTTACAG Gene: CD0201: Chromate transport protein |
|
Chromate transport protein |
| CRON 17. | ||||
| CD0279A |
|
*
Clostridium difficile 630 Site: position = -370 score = 4.18945 sequence = AAGAAAACGTTATTAC Site: position = -325 score = 3.92466 sequence = AATAAAAAGATTTTTA Gene: CD0279A: hypothetical protein |
|
hypothetical protein |
| CRON 18. | ||||
| virS |
|
*
Clostridium difficile 630 Site: position = 93 score = 4.87337 sequence = GAGAAAAGGATTTCTA Gene: CD0576: virS protein |
|
virS protein |
| CRON 19. | ||||
| fba |
*
Clostridium hiranonis DSM 13275 Site: position = -112 score = 4.75934 sequence = AAGAAAATGTTTGCAA Gene: CLOHIR_01724: Fructose-bisphosphate aldolase class II (EC 4.1.2.13) |
Gene: CD0403: Fructose-bisphosphate aldolase class II (EC 4.1.2.13) |
|
Fructose-bisphosphate aldolase class II (EC 4.1.2.13) |
| CRON 20. | ||||
| oppB |
|
*
Clostridium difficile 630 Site: position = -197 score = 4.07605 sequence = AATAAAATAATTTGAT Gene: CD0853: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) |
|
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) |
| oppC |
|
*
Clostridium difficile 630 Site: position = -305 score = 3.96992 sequence = AGCAAAAGGTTTAAAT Site: position = -184 score = 3.62774 sequence = GAAAAAGTTTTTTCTT Site: position = -186 score = 3.75095 sequence = TTGAAAAAGTTTTTTC Gene: CD0854: Peptide ABC transporter, permease protein |
|
Peptide ABC transporter, permease protein |
| oppA |
|
*
Clostridium difficile 630 Site: position = -302 score = 3.75194 sequence = AGGAATTGGTTTACCA Gene: CD0855: Oligopeptide ABC transporter oligopeptide-binding protein |
|
Oligopeptide ABC transporter oligopeptide-binding protein |
| oppD |
|
Gene: CD0856: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) |
|
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) |
| CRON 21. | ||||
| malX |
|
*
Clostridium difficile 630 Site: position = -141 score = 3.89268 sequence = TTGAAAAAATTTACAG Site: position = -39 score = 4.56583 sequence = TAGAAAACGTTTTAAA Gene: CD1336: PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69) |
|
PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69) |
| CD1337 |
|
Gene: CD1337: Transcriptional regulator, RpiR family |
|
Transcriptional regulator, RpiR family |
| glvG |
|
*
Clostridium difficile 630 Site: position = -142 score = 4.16395 sequence = ATGAAAAAAATTACAA Gene: CD1338: Maltose-6'-phosphate glucosidase (EC 3.2.1.122) |
|
Maltose-6'-phosphate glucosidase (EC 3.2.1.122) |
| CRON 22. | ||||
| CD0679 |
|
*
Clostridium difficile 630 Site: position = 32 score = 4.17287 sequence = AAGAAATTATTTTGAA Site: position = -66 score = 4.19972 sequence = AGGAAATCGTATGCAT Site: position = -168 score = 4.71915 sequence = ATGATAACATTTTCTT Gene: CD0679: hypothetical protein |
|
hypothetical protein |
| CD0680 |
|
Gene: CD0680: hypothetical protein |
|
hypothetical protein |
| CRON 23. | ||||
| pgi |
*
Clostridium hiranonis DSM 13275 Site: position = -159 score = 4.87279 sequence = GAAAAAACGATTTCTT Site: position = -11 score = 4.0925 sequence = AGAAAAATATTATGAT Gene: CLOHIR_01209: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: CD3285: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
*
Clostridium bartlettii DSM 16795 Site: position = -172 score = 4.22675 sequence = GTGATATCGTTTTCAA Site: position = -208 score = 4.38582 sequence = AGGAAAAATATATCAT Gene: CLOBAR_00319: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Glucose-6-phosphate isomerase (EC 5.3.1.9) |
| CRON 24. | ||||
| CD2111 |
|
*
Clostridium difficile 630 Site: position = -6 score = 4.2071 sequence = TAGAAAATGTTTGCAG Gene: CD2111: Glycerol-3-phosphate regulon repressor |
|
Glycerol-3-phosphate regulon repressor |
| CRON 25. | ||||
| CD2173 |
|
*
Clostridium difficile 630 Site: position = 55 score = 4.03024 sequence = GAGAAAAAATTATAAA Gene: CD2173: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) |
|
N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) |
| CD2172 |
|
Gene: CD2172: Amino acid ABC transporter, ATP-binding protein |
|
Amino acid ABC transporter, ATP-binding protein |
| CRON 26. | ||||
| nanE |
|
*
Clostridium difficile 630 Site: position = -73 score = 5.5678 sequence = AAGAAAAAGTTTTCAT Gene: CD2241: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
|
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
| nanA |
*
Clostridium hiranonis DSM 13275 Site: position = -77 score = 4.3206 sequence = AGGAAAACGTTAATTA Gene: CLOHIR_00196: N-acetylneuraminate lyase (EC 4.1.3.3) |
Gene: CD2240: N-acetylneuraminate lyase (EC 4.1.3.3) |
|
N-acetylneuraminate lyase (EC 4.1.3.3) |
| nanP |
Gene: CLOHIR_00197: Predicted sialic acid transporter |
Gene: CD2239: Predicted sialic acid transporter |
|
Predicted sialic acid transporter |
| CRON 27. | ||||
| CD2283 |
|
*
Clostridium difficile 630 Site: position = -71 score = 4.31051 sequence = TAGAAAAAAATATCAA Gene: CD2283: NtrC family Transcriptional regulator, ATPase domain |
|
NtrC family Transcriptional regulator, ATPase domain |
| CD2282 |
|
Gene: CD2282: PTS system, galactitol-specific IIA component (EC 2.7.1.69) |
|
PTS system, galactitol-specific IIA component (EC 2.7.1.69) |
| CD2281 |
|
*
Clostridium difficile 630 Site: position = -11 score = 3.90834 sequence = AGGAAATTATTATGAA Gene: CD2281: PTS system, IIb component |
|
PTS system, IIb component |
| CD2280 |
|
*
Clostridium difficile 630 Site: position = -101 score = 3.94201 sequence = GAAAAAACATTTTATA Gene: CD2280: PTS system, galactitol-specific IIC component (EC 2.7.1.69) |
|
PTS system, galactitol-specific IIC component (EC 2.7.1.69) |
| CRON 28. | ||||
| gatA |
*
Clostridium hiranonis DSM 13275 Site: position = -153 score = 4.74124 sequence = AAAAAAACATTTTCCT Gene: CLOHIR_00174: PTS system, galactitol-specific IIA component (EC 2.7.1.69) |
*
Clostridium difficile 630 Site: position = -114 score = 5.28208 sequence = GGGAAAACATTTTCTT Gene: CD2327: PTS system, galactitol-specific IIA component (EC 2.7.1.69) |
|
PTS system, galactitol-specific IIA component (EC 2.7.1.69) |
| gatB |
Gene: CLOHIR_00175: PTS system, galactitol-specific IIB component (EC 2.7.1.69) |
Gene: CD2326: PTS system, galactitol-specific IIB component (EC 2.7.1.69) |
|
PTS system, galactitol-specific IIB component (EC 2.7.1.69) |
| gatC |
Gene: CLOHIR_00176: PTS system, galactitol-specific IIC component (EC 2.7.1.69) |
Gene: CD2325: PTS system, galactitol-specific IIC component (EC 2.7.1.69) |
|
PTS system, galactitol-specific IIC component (EC 2.7.1.69) |
| gatD |
|
Gene: CD2324: Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) |
|
Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) |
| gatD2 |
Gene: CLOHIR_00177: Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) |
Gene: CD2323: Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) |
|
Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) |
| CRON 29. | ||||
| CD2344 |
|
*
Clostridium difficile 630 Site: position = -153 score = 4.30246 sequence = AAGATAAAATTTTTTT Gene: CD2344: putative transport protein |
|
putative transport protein |
| cat1 |
|
Gene: CD2343: Succinyl-CoA:coenzyme A transferase (EC 2.8.3.-) |
|
Succinyl-CoA:coenzyme A transferase (EC 2.8.3.-) |
| sucD |
|
Gene: CD2342: Succinate-semialdehyde dehydrogenase, CoA-dependent |
|
Succinate-semialdehyde dehydrogenase, CoA-dependent |
| CRON 30. | ||||
| CD2347 |
|
*
Clostridium difficile 630 Site: position = -31 score = 3.81921 sequence = AAGATAAAATTTATTA Site: position = 175 score = 4.27219 sequence = CAGAAAAGGTTTGCAA Gene: CD2347: Xaa-Pro dipeptidase (EC 3.4.13.9) |
|
Xaa-Pro dipeptidase (EC 3.4.13.9) |
| CRON 31. | ||||
| porA |
|
*
Clostridium difficile 630 Site: position = -10 score = 4.0422 sequence = GAGAAAAGGTATGCAA Gene: CD2429: Pyruvate synthase alpha chain (EC 1.2.7.1) |
|
Pyruvate synthase alpha chain (EC 1.2.7.1) |
| porB |
|
Gene: CD2428: Pyruvate synthase subunit porB (EC 1.2.7.1) |
|
Pyruvate synthase subunit porB (EC 1.2.7.1) |
| vorA |
|
Gene: CD2427: Ketoisovalerate oxidoreductase subunit vorA (EC 1.-.-.-) |
|
Ketoisovalerate oxidoreductase subunit vorA (EC 1.-.-.-) |
| CRON 32. | ||||
| ung |
Gene: CLOHIR_02028: Uracil-DNA glycosylase, family 1 |
*
Clostridium difficile 630 Site: position = 46 score = 4.27301 sequence = TTGAAAAAGATTACTA Gene: CD2481: Uracil-DNA glycosylase, family 1 |
*
Clostridium bartlettii DSM 16795 Site: position = -71 score = 3.94066 sequence = TTTAAATAATTTTCTT Gene: CLOBAR_02757: Uracil-DNA glycosylase, family 1 |
Uracil-DNA glycosylase, family 1 |
| CRON 33. | ||||
| cstA |
Gene: CLOHIR_00156: Carbon starvation protein A |
*2
Clostridium difficile 630 Site: position = -68 score = 4.98958 sequence = TGGAAATAGTTTTCTT Gene: CD2600: Carbon starvation protein A Gene: CD2373: Carbon starvation protein A |
Gene: CLOBAR_02675: Carbon starvation protein A |
Carbon starvation protein A |
| CRON 34. | ||||
| CD2625 |
|
*
Clostridium difficile 630 Site: position = 17 score = 4.82564 sequence = AGGAACAGGTTTACTT Site: position = -60 score = 5.06943 sequence = AGGATAACGTTATCAT Gene: CD2625: Perfringolysin O regulator protein PfoR |
Gene: CLOBAR_01832: Perfringolysin O regulator protein PfoR |
Perfringolysin O regulator protein PfoR |
| CRON 35. | ||||
| CD2693 |
*
Clostridium hiranonis DSM 13275 Site: position = 18 score = 4.01825 sequence = AAGAAAAAAATTGGCT Gene: CLOHIR_01036: putative sodium:dicarboxylate symporter |
*
Clostridium difficile 630 Site: position = 3 score = 4.04038 sequence = AAGAAAAAAATAGGTT Gene: CD2693: putative sodium:dicarboxylate symporter |
|
putative sodium:dicarboxylate symporter |
| CRON 36. | ||||
| brnQ |
Gene: CLOHIR_01027: Branched-chain amino acid transport system carrier protein |
*
Clostridium difficile 630 Site: position = -105 score = 4.83738 sequence = GGGAAAACGTTAACAA Gene: CD2702: Branched-chain amino acid transport system carrier protein |
*
Clostridium bartlettii DSM 16795 Site: position = -75 score = 4.05532 sequence = GGAAAAAGGTTTATAT Gene: CLOBAR_01893: Branched-chain amino acid transport system carrier protein |
Branched-chain amino acid transport system carrier protein |
| CRON 37. | ||||
| CD2879 |
|
*
Clostridium difficile 630 Site: position = -127 score = 4.98739 sequence = TAGATAAGGTTTTCTT Gene: CD2879: hypothetical protein |
|
hypothetical protein |
| CRON 38. | ||||
| licB |
|
*
Clostridium difficile 630 Site: position = -187 score = 5.23397 sequence = ATGAAAAAGTTTTCTT Gene: CD2884: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) |
*
Clostridium bartlettii DSM 16795 Site: position = -114 score = 4.42202 sequence = AGGAAAAGGGTTGCAT Gene: CLOBAR_00645: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) |
PTS system, cellobiose-specific IIB component (EC 2.7.1.69) |
| celB |
|
Gene: CD2883: PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
|
PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
| celF |
|
Gene: CD2882: 6-phospho-beta-glucosidase (EC 3.2.1.86) |
|
6-phospho-beta-glucosidase (EC 3.2.1.86) |
| CD2881 |
|
Gene: CD2881: Cellobiose phosphotransferase system YdjC-like protein |
|
Cellobiose phosphotransferase system YdjC-like protein |
| celC |
|
Gene: CD2880: PTS system, cellobiose-specific IIA component (EC 2.7.1.69) |
|
PTS system, cellobiose-specific IIA component (EC 2.7.1.69) |
| CRON 39. | ||||
| cggR |
*
Clostridium hiranonis DSM 13275 Site: position = -163 score = 4.43499 sequence = GATATATCGTTTTCTT Gene: CLOHIR_00836: Central glycolytic genes regulator |
*
Clostridium difficile 630 Site: position = -80 score = 3.99745 sequence = AAAATAAAAATATCTT Site: position = 108 score = 4.21706 sequence = AGGAGAACATTATCAA Gene: CD3175: Central glycolytic genes regulator |
*
Clostridium bartlettii DSM 16795 Site: position = -16 score = 3.99745 sequence = AAAATAAAAATATCTT Site: position = -51 score = 3.98976 sequence = GAGAAAACATATTGAA Gene: CLOBAR_00380: Central glycolytic genes regulator |
Central glycolytic genes regulator |
| CRON 40. | ||||
| CD3218 |
Gene: CLOHIR_00125: hypothetical protein |
*
Clostridium difficile 630 Site: position = 253 score = 4.27074 sequence = GAGTTAACGTTTTCAA Gene: CD3218: hypothetical protein |
Gene: CLOBAR_00652: hypothetical protein |
hypothetical protein |
| CRON 41. | ||||
| prdA |
Gene: CLOHIR_00797: D-proline reductase, 23 kDa subunit (EC 1.21.4.1) |
*
Clostridium difficile 630 Site: position = -294 score = 4.86217 sequence = GAGAAAATGTTTACAA Gene: CD3244: D-proline reductase, 23 kDa subunit (EC 1.21.4.1) |
|
D-proline reductase, 23 kDa subunit (EC 1.21.4.1) |
| CLOHIR_00798 |
Gene: CLOHIR_00798: hypothetical protein |
Gene: CD3243: hypothetical protein |
|
hypothetical protein |
| prdB |
Gene: CLOHIR_00800: proline reductase |
Gene: CD3241: proline reductase |
|
proline reductase |
| prdC |
Gene: CLOHIR_00801: Proline reductase proprotein, two subunits |
Gene: CD3240: Proline reductase proprotein, two subunits |
|
Proline reductase proprotein, two subunits |
| CD3239 |
|
Gene: CD3239: Proline reductase proprotein, two subunits |
|
Proline reductase proprotein, two subunits |
| CD3238 |
|
Gene: CD3238: Proline reductase proprotein, two subunits |
|
Proline reductase proprotein, two subunits |
| prdF |
Gene: CLOHIR_00803: Proline racemase (EC 5.1.1.4) |
Gene: CD3237: Proline racemase (EC 5.1.1.4) |
|
Proline racemase (EC 5.1.1.4) |
| CRON 42. | ||||
| ldhA |
|
*
Clostridium difficile 630 Site: position = -207 score = 4.34061 sequence = AAAATAACAATTTCTT Site: position = -319 score = 4.55935 sequence = CAAAAAAAGTTTTCAT Site: position = -130 score = 4.6953 sequence = GGGAAAACAATTTCAA Gene: CD0394: D-lactate dehydrogenase (EC 1.1.1.28) |
|
D-lactate dehydrogenase (EC 1.1.1.28) |
| CRON 43. | ||||
| CD0850 |
|
*
Clostridium difficile 630 Site: position = 169 score = 4.03349 sequence = TTGAAAATGTTTTGGT Gene: CD0850: hypothetical protein |
Gene: CLOBAR_02460: hypothetical protein |
hypothetical protein |
| CRON 44. | ||||
| spoIIAA |
|
*
Clostridium difficile 630 Site: position = 88 score = 4.53237 sequence = AAGAAATAGATAACTT Gene: CD0770: anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV |
*
Clostridium bartlettii DSM 16795 Site: position = 2 score = 3.76563 sequence = GATAAAATGTTATTTA Gene: CLOBAR_01234: anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV |
anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV |
| spoIIAB |
|
Gene: CD0771: Anti-sigma F factor (EC 2.7.11.1) |
Gene: CLOBAR_01233: Anti-sigma F factor (EC 2.7.11.1) |
Anti-sigma F factor (EC 2.7.11.1) |
| sigF |
*
Clostridium hiranonis DSM 13275 Site: position = -218 score = 4.02926 sequence = AATAAAAAGTTATTCT Gene: CLOHIR_00712: RNA polymerase sporulation specific sigma factor SigF |
Gene: CD0772: RNA polymerase sporulation specific sigma factor SigF |
Gene: CLOBAR_01232: RNA polymerase sporulation specific sigma factor SigF |
RNA polymerase sporulation specific sigma factor SigF |
| CRON 45. | ||||
| CD0183 |
Gene: CLOHIR_00047: Invasion associated protein p60 |
*
Clostridium difficile 630 Site: position = 3 score = 4.13843 sequence = AAGAAAAAGATATTAA Gene: CD0183: Invasion associated protein p60 |
|
Invasion associated protein p60 |
| CRON 46. | ||||
| CD2791 |
*
Clostridium hiranonis DSM 13275 Site: position = -141 score = 4.29873 sequence = GAGAATAAGTTATCAA Gene: CLOHIR_00956: cell surface protein (putative S-layer protein precursor) |
*
Clostridium difficile 630 Site: position = -131 score = 4.71574 sequence = AAGAAAAAGTTTATAT Gene: CD2791: cell surface protein (putative S-layer protein precursor) |
|
cell surface protein (putative S-layer protein precursor) |
| CRON 47. | ||||
| dltD |
|
*
Clostridium difficile 630 Site: position = 184 score = 4.26211 sequence = GAGAAAAGGATATTAT Gene: CD2854: Poly(glycerophosphate chain) D-alanine transfer protein DltD |
|
Poly(glycerophosphate chain) D-alanine transfer protein DltD |
| dltA |
|
Gene: CD2853: D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13) |
|
D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13) |
| dltB |
|
Gene: CD2852: D-alanyl transfer protein DltB |
|
D-alanyl transfer protein DltB |
| dltC |
|
Gene: CD2851: D-alanine--poly(phosphoribitol) ligase subunit 2 (EC 6.1.1.13) |
|
D-alanine--poly(phosphoribitol) ligase subunit 2 (EC 6.1.1.13) |
| CRON 48. | ||||
| CD2795 |
|
*
Clostridium difficile 630 Site: position = 12 score = 4.4988 sequence = AAAAAAATATTATCAT Gene: CD2795: N-acetylmuramoyl-L-alanine amidase |
|
N-acetylmuramoyl-L-alanine amidase |
| CRON 49. | ||||
| CD0830 |
|
*
Clostridium difficile 630 Site: position = -269 score = 4.16325 sequence = AAGAAAAAATTATATA Gene: CD0830: Transporter |
|
Transporter |
| CRON 50. | ||||
| ptsH |
Gene: CLOHIR_00990: Phosphocarrier protein of PTS system |
*
Clostridium difficile 630 Site: position = -55 score = 4.1537 sequence = AGGAAAACAATTTTAA Gene: CD2756: Phosphocarrier protein of PTS system |
*
Clostridium bartlettii DSM 16795 Site: position = -39 score = 3.82143 sequence = AAAATAAAATTTTTAT Gene: CLOBAR_02362: Phosphocarrier protein of PTS system |
Phosphocarrier protein of PTS system |
| CRON 51. | ||||
| CD0209 |
|
*
Clostridium difficile 630 Site: position = 0 score = 4.10368 sequence = ATGAAAAAGTTACCAA Gene: CD0209: probable tagatose 6-phosphate kinase |
|
probable tagatose 6-phosphate kinase |
| CRON 52. | ||||
| tdcB |
Gene: CLOHIR_01990: Threonine dehydratase (EC 4.3.1.19) |
*
Clostridium difficile 630 Site: position = -94 score = 4.47874 sequence = TAAAAATCGTTTACAT Gene: CD2514: Threonine dehydratase (EC 4.3.1.19) |
Gene: CLOBAR_00898: Threonine dehydratase (EC 4.3.1.19) |
Threonine dehydratase (EC 4.3.1.19) |
| CRON 53. | ||||
| CD2385 |
|
*
Clostridium difficile 630 Site: position = 221 score = 4.02815 sequence = TAGAACTCATTTTGAT Gene: CD2485: Xaa-Pro dipeptidase (EC 3.4.13.9) |
|
Xaa-Pro dipeptidase (EC 3.4.13.9) |
| CRON 54. | ||||
| grdX |
*
Clostridium hiranonis DSM 13275 Site: position = 47 score = 4.24687 sequence = AAAAGAAAGTTTTCCT Site: position = 116 score = 4.30184 sequence = TAGAAAATATATTCAT Gene: CLOHIR_00161: GrdX protein |
*
Clostridium difficile 630 Site: position = 197 score = 4.51437 sequence = AGGAAATCGTTTGGAT Gene: CD2357: GrdX protein |
|
GrdX protein |
| trxB3 |
*
Clostridium hiranonis DSM 13275 Site: position = -97 score = 4.32997 sequence = CGGAAAACATTTACAA Gene: CLOHIR_00162: Thioredoxin reductase (EC 1.8.1.9) |
Gene: CD2356: Thioredoxin reductase (EC 1.8.1.9) |
|
Thioredoxin reductase (EC 1.8.1.9) |
| CRON 55. | ||||
| trxA2 |
Gene: CLOHIR_00163: Thioredoxin |
*
Clostridium difficile 630 Site: position = -6 score = 4.19773 sequence = AAGAAAATGTTAGATT Gene: CD2355: Thioredoxin |
|
Thioredoxin |
| CRON 56. | ||||
| grdE |
Gene: CLOHIR_00164: Glycine reductase component B beta subunit (EC 1.21.4.2) / Glycine reductase component B alpha subunit (EC 1.21.4.2) |
*
Clostridium difficile 630 Site: position = -211 score = 4.36578 sequence = AGAAAAAGGTTTTTAT Gene: CD2354: Glycine reductase component B beta subunit (EC 1.21.4.2) / Glycine reductase component B alpha subunit (EC 1.21.4.2) |
|
Glycine reductase component B beta subunit (EC 1.21.4.2) / Glycine reductase component B alpha subunit (EC 1.21.4.2) |
| CRON 57. | ||||
| gcvPB |
|
*2
Clostridium difficile 630 Site: position = -493 score = 4.14417 sequence = GTGAAAATGTTATTTT Gene: CD1657: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) Gene: CD1658: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
|
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
| CRON 58. | ||||
| CD3664 |
*
Clostridium hiranonis DSM 13275 Site: position = -31 score = 4.28211 sequence = AAATAAACATTTTCAT Gene: CLOHIR_02123: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
*
Clostridium difficile 630 Site: position = -31 score = 5.41237 sequence = AAGAAAACATTTTCAT Gene: CD3664: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
2
Clostridium bartlettii DSM 16795 Gene: CLOBAR_02749: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) Gene: CLOBAR_01198: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
| CRON 59. | ||||
| rlmH |
Gene: CLOHIR_02154: LSU m3Psi1915 methyltransferase RlmH |
*
Clostridium difficile 630 Site: position = 69 score = 4.62605 sequence = AAGAAAAGGCTTTCTA Gene: CD3649: LSU m3Psi1915 methyltransferase RlmH |
*
Clostridium bartlettii DSM 16795 Site: position = 69 score = 4.58872 sequence = AAAAAAAGGTTATCTA Gene: CLOBAR_00039: LSU m3Psi1915 methyltransferase RlmH |
LSU m3Psi1915 methyltransferase RlmH |
| CRON 60. | ||||
| CD0177 |
|
*
Clostridium difficile 630 Site: position = -88 score = 4.05402 sequence = TGAAAAAATTTTACTT Gene: CD0177: Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) |
|
Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) |
| CRON 61. | ||||
| tagK |
|
*
Clostridium difficile 630 Site: position = -68 score = 4.77087 sequence = GTGAAAAGATTTTCAT Gene: CD3076: 1-phosphofructokinase (EC 2.7.1.56) |
*
Clostridium bartlettii DSM 16795 Site: position = -79 score = 4.20329 sequence = TGAAAATGGTTTTCTA Site: position = -60 score = 4.68233 sequence = TTGAAAAGATTTTCAT Gene: CLOBAR_02382: 1-phosphofructokinase (EC 2.7.1.56) |
1-phosphofructokinase (EC 2.7.1.56) |
| tagT |
|
Gene: CD3075: PTS system, fructose-specific IIBC component (EC 2.7.1.69) |
Gene: CLOBAR_02383: PTS system, fructose-specific IIBC component (EC 2.7.1.69) |
PTS system, fructose-specific IIBC component (EC 2.7.1.69) |
| gatY |
|
Gene: CD3074: Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) |
Gene: CLOBAR_02384: Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) |
Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |