Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Rex in Clostridium bartlettii DSM 16795

Properties
Regulator type: Transcription factor
TF locus tag: CLOBAR_00711, CLOBAR_01830
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Regulog: Rex - Clostridia-2
Statistics of regulated genes:
- Genes 19
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 34 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -113
Score: 4.7
Sequence: AAATTAAAAATTTAACTA
Locus tag: CLOBAR_00531
Name: nadA
Funciton: Quinolinate synthetase (EC 4.1.99.-)
Locus tag: CLOBAR_00532
Name: nadB
Funciton: L-aspartate oxidase (EC 1.4.3.16)
Locus tag: CLOBAR_00533
Name: nadC
Funciton: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)
CLOBAR_00531
nadA
Quinolinate synthetase (EC 4.1.99.-)
CLOBAR_00532
nadB
L-aspartate oxidase (EC 1.4.3.16)
CLOBAR_00533
nadC
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)
Position: -99
Score: 4.1
Sequence: TTGGTATAATATAATCAA
Position: -37
Score: 4
Sequence: TTGTTATGAAAATATTAA
Locus tag: CLOBAR_00711
Name: rex
Funciton: Redox-sensitive transcriptional regulator Rex
CLOBAR_00711
rex
Redox-sensitive transcriptional regulator Rex
Position: -156
Score: 4.3
Sequence: ATAATATATTATTAACTA
Locus tag: CLOBAR_01830
Name: rex
Funciton: Redox-sensitive transcriptional regulator Rex
CLOBAR_01830
rex
Redox-sensitive transcriptional regulator Rex
Position: -188
Score: 5.5
Sequence: ATGATAAAAAAATAACAA
Position: -130
Score: 5.3
Sequence: ATGTTAAACAAATAACAA
Position: -106
Score: 4.8
Sequence: AGGTTAATAATATAACAT
Locus tag: CLOBAR_00502
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10)
CLOBAR_00502
adhE
Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -169
Score: 4.9
Sequence: ATGTTAAAAAAGTATCAT
Position: -125
Score: 4.4
Sequence: TATTTAAATTTTTAAAAA
Locus tag: CLOBAR_00902
Name: hydC
Funciton: NAD-reducing Fe-hydrogenase, subunit HydC (EC 1.12.7.2)
Locus tag: CLOBAR_00901
Name: hydB
Funciton: NAD-reducing Fe-hydrogenase, subunit HydB (EC 1.12.7.2)
Locus tag: CLOBAR_00900
Name: hydA
Funciton: NAD-reducing Fe-hydrogenase, subunit HydA (EC 1.12.7.2)
CLOBAR_00902
hydC
NAD-reducing Fe-hydrogenase, subunit HydC (EC 1.12.7.2)
CLOBAR_00901
hydB
NAD-reducing Fe-hydrogenase, subunit HydB (EC 1.12.7.2)
CLOBAR_00900
hydA
NAD-reducing Fe-hydrogenase, subunit HydA (EC 1.12.7.2)
Position: -128
Score: 4.7
Sequence: TAGATAATTAAATAAAAA
Locus tag: CLOBAR_00255
Name: hydC
Funciton: NAD-reducing Fe-hydrogenase, subunit HydC (EC 1.12.7.2)
Locus tag: CLOBAR_00256
Name: hydB
Funciton: NAD-reducing Fe-hydrogenase, subunit HydB (EC 1.12.7.2)
CLOBAR_00255
hydC
NAD-reducing Fe-hydrogenase, subunit HydC (EC 1.12.7.2)
CLOBAR_00256
hydB
NAD-reducing Fe-hydrogenase, subunit HydB (EC 1.12.7.2)
Position: -138
Score: 4.3
Sequence: TTTTTATTAATTTAAAAT
Position: -119
Score: 5.2
Sequence: ATGTTAATAAATAAACAA
Locus tag: CLOBAR_02282
Name: glcA
Funciton: Glycolate permease
Locus tag: CLOBAR_02281
Name: PF09861
Funciton: Protein of unknown function DUF2088
Locus tag: CLOBAR_02280
Name: etfB
Funciton: Electron transfer flavoprotein beta-subunit
Locus tag: CLOBAR_02279
Name: etfB
Funciton: Electron transfer flavoprotein beta-subunit
Locus tag: CLOBAR_02278
Name: etfA
Funciton: Electron transfer flavoprotein alpha-subunit
Locus tag: CLOBAR_02277
Name: glcD
Funciton: Glycolate oxidase (EC 1.1.99.14), FAD/FMN-containing
CLOBAR_02282
glcA
Glycolate permease
CLOBAR_02281
PF09861
Protein of unknown function DUF2088
CLOBAR_02280
etfB
Electron transfer flavoprotein beta-subunit
CLOBAR_02279
etfB
Electron transfer flavoprotein beta-subunit
CLOBAR_02278
etfA
Electron transfer flavoprotein alpha-subunit
CLOBAR_02277
glcD
Glycolate oxidase (EC 1.1.99.14), FAD/FMN-containing
Position: -91
Score: 4.9
Sequence: ACGTTAAGAATTTAACAA
Locus tag: CLOBAR_02221
Name: CD2707
Funciton: Transport protein, MFS family
CLOBAR_02221
CD2707
Transport protein, MFS family
Position: -94
Score: 5.5
Sequence: ATGTTAAAAAAATAACAT
Locus tag: CLOBAR_01995
Name: lldD
Funciton: L-lactate dehydrogenase
CLOBAR_01995
lldD
L-lactate dehydrogenase
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