Regulons of Clostridium scindens ATCC 35704

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	ArgR	Arginine	Arginine biosynthesis	4	2
TF	BirA	Biotin	Biotin biosynthesis	2	2
TF	CzrA	Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+)	Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance	1	1
TF	DtxR	New effector	Metal homeostasis	2	2
TF	Fur	Iron ion, (Fe2+)	Iron homeostasis	5	5
TF	HisR	Histidine	Histidine biosynthesis	3	3
TF	HrcA	Heat shock	Heat shock response	6	6
TF	IdeR	Iron ion, (Fe2+)	Iron homeostasis	8	5
TF	IscR	Iron-sulfur cluster redox state	Iron-sulfur cluster biogenesis	1	1
TF	LexA	DNA damage	SOS response	4	9
TF	NiaR	Niacin	NAD biosynthesis	2	2
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	5	8
TF	PdxR	Pyridoxal-5-phosphate	Pyridoxine biosynthesis	2	2
TF	Rex	NADH	Energy metabolism	14	4
TF	YhcF		Multidrug resistance; Multidrug efflux	2	2
RNA	Cobalamin	Adenosylcobalamin	Cobalamin biosynthesis	8	2
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	2	2
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	2	2
RNA	Glycine	Glycine	Glycine metabolism	4	3
RNA	L10_leader		Ribosome biogenesis	1	1
RNA	L19_leader		Ribosome biogenesis	1	1
RNA	L20_leader		Ribosome biogenesis	1	1
RNA	L21_leader		Ribosome biogenesis	1	1
RNA	Lysine	Lysine	Lysine biosynthesis	5	1
RNA	MOCO_RNA_motif	Molybdenum	Molybdopterin biosynthesis; Molybdenum homeostasis	5	2
RNA	PreQ1	Pre-queuosine1	Queuosine biosynthesis	1	1
RNA	Purine	Adenine; Guanine	Purine metabolism	12	1
RNA	SAM	S-adenosylmethionine	Methionine biosynthesis	11	1
RNA	T-box(Asn)	Asn-tRNA	Amino acid metabolism	2	1
RNA	T-box(Cys)	Cys-tRNA	Amino acid metabolism	3	1
RNA	T-box(Ile)	Ile-tRNA	Amino acid metabolism	5	1
RNA	T-box(Leu)	Leu-tRNA	Amino acid metabolism	2	1
RNA	T-box(Met)	Met-tRNA	Amino acid metabolism	1	1
RNA	T-box(Phe)	Phe-tRNA	Amino acid metabolism	1	1
RNA	T-box(Pro)	Pro-tRNA	Amino acid metabolism	1	1
RNA	T-box(Trp)	Trp-tRNA	Amino acid metabolism	3	1
RNA	T-box(Tyr)	Tyr-tRNA	Amino acid metabolism	1	1
RNA	T-box(Val)	Val-tRNA	Amino acid metabolism	3	2
RNA	THF	Tetrahydrofolate	Folate metabolism	1	1
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	4	3
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	4	3
RNA	yybP-ykoY			3	2

	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulons of Clostridium scindens ATCC 35704

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --