Regulons of Clostridium scindens ATCC 35704
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
ArgR |
Arginine |
Arginine biosynthesis |
4 |
2 |
| TF |
BirA |
Biotin |
Biotin biosynthesis |
2 |
2 |
| TF |
CzrA |
Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) |
Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance |
1 |
1 |
| TF |
DtxR |
New effector |
Metal homeostasis |
2 |
2 |
| TF |
Fur |
Iron ion, (Fe2+) |
Iron homeostasis |
5 |
5 |
| TF |
HisR |
Histidine |
Histidine biosynthesis |
3 |
3 |
| TF |
HrcA |
Heat shock |
Heat shock response |
6 |
6 |
| TF |
IdeR |
Iron ion, (Fe2+) |
Iron homeostasis |
8 |
5 |
| TF |
IscR |
Iron-sulfur cluster redox state |
Iron-sulfur cluster biogenesis |
1 |
1 |
| TF |
LexA |
DNA damage |
SOS response |
4 |
9 |
| TF |
NiaR |
Niacin |
NAD biosynthesis |
2 |
2 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
5 |
8 |
| TF |
PdxR |
Pyridoxal-5-phosphate |
Pyridoxine biosynthesis |
2 |
2 |
| TF |
Rex |
NADH |
Energy metabolism |
14 |
4 |
| TF |
YhcF |
|
Multidrug resistance; Multidrug efflux |
2 |
2 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
8 |
2 |
| RNA |
FMN |
Flavin mononucleotide |
Riboflavin biosynthesis |
2 |
2 |
| RNA |
FMN |
Flavin mononucleotide |
Riboflavin biosynthesis |
2 |
2 |
| RNA |
Glycine |
Glycine |
Glycine metabolism |
4 |
3 |
| RNA |
L10_leader |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
L19_leader |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
L20_leader |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
L21_leader |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
Lysine |
Lysine |
Lysine biosynthesis |
5 |
1 |
| RNA |
MOCO_RNA_motif |
Molybdenum |
Molybdopterin biosynthesis; Molybdenum homeostasis |
5 |
2 |
| RNA |
PreQ1 |
Pre-queuosine1 |
Queuosine biosynthesis |
1 |
1 |
| RNA |
Purine |
Adenine; Guanine |
Purine metabolism |
12 |
1 |
| RNA |
SAM |
S-adenosylmethionine |
Methionine biosynthesis |
11 |
1 |
| RNA |
T-box(Asn) |
Asn-tRNA |
Amino acid metabolism |
2 |
1 |
| RNA |
T-box(Cys) |
Cys-tRNA |
Amino acid metabolism |
3 |
1 |
| RNA |
T-box(Ile) |
Ile-tRNA |
Amino acid metabolism |
5 |
1 |
| RNA |
T-box(Leu) |
Leu-tRNA |
Amino acid metabolism |
2 |
1 |
| RNA |
T-box(Met) |
Met-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Phe) |
Phe-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Pro) |
Pro-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Trp) |
Trp-tRNA |
Amino acid metabolism |
3 |
1 |
| RNA |
T-box(Tyr) |
Tyr-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Val) |
Val-tRNA |
Amino acid metabolism |
3 |
2 |
| RNA |
THF |
Tetrahydrofolate |
Folate metabolism |
1 |
1 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
4 |
3 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
4 |
3 |
| RNA |
yybP-ykoY |
|
|
3 |
2 |
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Regulated Genes
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