Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Clostridium scindens ATCC 35704

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine biosynthesis 4 2
TF BirA Biotin Biotin biosynthesis 2 2
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 1 1
TF DtxR New effector Metal homeostasis 2 2
TF Fur Iron ion, (Fe2+) Iron homeostasis 5 5
TF HisR Histidine Histidine biosynthesis 3 3
TF HrcA Heat shock Heat shock response 6 6
TF IdeR Iron ion, (Fe2+) Iron homeostasis 8 5
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 1 1
TF LexA DNA damage SOS response 4 9
TF NiaR Niacin NAD biosynthesis 2 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 5 8
TF PdxR Pyridoxal-5-phosphate Pyridoxine biosynthesis 2 2
TF Rex NADH Energy metabolism 14 4
TF YhcF Multidrug resistance; Multidrug efflux 2 2
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 8 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA Glycine Glycine Glycine metabolism 4 3
RNA L10_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 5 1
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 5 2
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 1 1
RNA Purine Adenine; Guanine Purine metabolism 12 1
RNA SAM S-adenosylmethionine Methionine biosynthesis 11 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 2 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 3 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 5 1
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 2 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 1 1
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 1 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 3 1
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 1 1
RNA T-box(Val) Val-tRNA Amino acid metabolism 3 2
RNA THF Tetrahydrofolate Folate metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 4 3
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 4 3
RNA yybP-ykoY 3 2
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