Regulon of NrdR in Clostridium scindens ATCC 35704
| Regulator type: | Transcription factor |
| TF locus tag: | CLOSCI_01651 |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Regulog: | NrdR - Clostridia-3 |
| Statistics of regulated genes: | |
| - Genes | 6 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -160
Score: 4.8 Sequence: TAACAATATATTGTGC
Position: -129
Score: 4.8 Sequence: GCACAATATATTGTTA
Position: -96
Score: 4.4 Sequence: ACACAATAAGTGGTAT
Locus tag: CLOSCI_01639
Name: nrdD2 Funciton: Oxygen-sensitive ribonucleoside-triphosphate reductase (EC 1.17.4.2)
Locus tag: CLOSCI_01638
Name: COG0492 Funciton: thioredoxin reductase |
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nrdD2
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Oxygen-sensitive ribonucleoside-triphosphate reductase (EC 1.17.4.2)
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COG0492
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thioredoxin reductase
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Position: -135
Score: 4.4 Sequence: AAAGTAAATATTGTAT
Position: -67
Score: 4.6 Sequence: GTGCTAGATATTGTAT
Position: -35
Score: 4.1 Sequence: AACCAACATTTAGTGG
Locus tag: CLOSCI_01031
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: CLOSCI_01030
Name: nrdG Funciton: anaerobic ribonucleoside-triphosphate reductase activating protein |
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nrdD
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG
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anaerobic ribonucleoside-triphosphate reductase activating protein
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Position: -64
Score: 5.1 Sequence: CAACAATATATTGTGG
Position: -33
Score: 4.4 Sequence: AATCAATAAATTGTAT
Locus tag: CLOSCI_02889
Name: nrdE Funciton: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
Locus tag: CLOSCI_02888
Name: nrdF Funciton: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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nrdE
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Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
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nrdF
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Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |