Regulog NrdR - Clostridia-3
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides pectinophilus ATCC 43243 | 3 | 2 |
| Blautia hansenii DSM 20583 | 3 | 2 |
| Bryantella formatexigens DSM 14469 | 1 | 1 |
| Clostridiales bacterium 1_7_47_FAA | 4 | 2 |
| Clostridium bolteae ATCC BAA-613 | 2 | 1 |
| Clostridium nexile DSM 1787 | 4 | 2 |
| Clostridium scindens ATCC 35704 | 6 | 3 |
| Dorea formicigenerans ATCC 27755 | 1 | 1 |
| Dorea longicatena DSM 13814 | 2 | 2 |
| Eubacterium eligens ATCC 27750 | 1 | 1 |
| Eubacterium rectale ATCC 33656 | 1 | 1 |
| Roseburia intestinalis L1-82 | 2 | 1 |
| Ruminococcus gnavus ATCC 29149 | 5 | 3 |
| Ruminococcus lactaris ATCC 29176 | 2 | 1 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| nrdD |
*2
Bacteroides pectinophilus ATCC 43243 Site: position = -147 score = 5.11295 sequence = GCACAATATATTGTTT Site: position = -116 score = 3.88826 sequence = TTTCTATATTTGGTAG Gene: BACPEC_00926: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Site: position = -159 score = 4.12183 sequence = ACGCAATATTTGGTAA Site: position = -128 score = 4.47345 sequence = TATCTATATATTGTGG Gene: BACPEC_00140: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Clostridiales bacterium 1_7_47_FAA Site: position = -141 score = 4.80858 sequence = ACACAACATTTAGTGC Site: position = -173 score = 3.83212 sequence = ATACATCCTATCGTAT Gene: Cbac1_010100006828: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Clostridium bolteae ATCC BAA-613 Site: position = -171 score = 3.96011 sequence = ATACATCTTATCGTAT Site: position = -140 score = 4.98145 sequence = ACACAACATTTAGTGG Gene: CLOBOL_02823: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Clostridium scindens ATCC 35704 Site: position = -67 score = 4.58667 sequence = GTGCTAGATATTGTAT Site: position = -35 score = 4.08906 sequence = AACCAACATTTAGTGG Site: position = -135 score = 4.44694 sequence = AAAGTAAATATTGTAT Gene: CLOSCI_01031: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Dorea formicigenerans ATCC 27755 Site: position = -162 score = 4.21833 sequence = ACGCCATATTTTGTAG Site: position = -129 score = 5.03846 sequence = ACACAATATCTTGTGA Site: position = -64 score = 4.8777 sequence = ACACAAGATGTTGTGG Gene: DORFOR_02443: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Dorea longicatena DSM 13814 Site: position = -102 score = 4.56888 sequence = GCACAATATCTTGTGC Site: position = -70 score = 4.9584 sequence = AAACAATATTTAGTAG Gene: DORLON_00953: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Eubacterium eligens ATCC 27750 Site: position = -178 score = 5.07151 sequence = TTACAAGATATTGTGT Site: position = -146 score = 4.58088 sequence = AGCCTATATGTTGTAT Gene: EUBELI_01571: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Eubacterium rectale ATCC 33656 Site: position = -284 score = 4.73032 sequence = CTACAAAATATTGTTG Site: position = -253 score = 4.85465 sequence = CAACAATATCTTGTAT Site: position = -26 score = 5.50789 sequence = ATACTATATATAGTAC Gene: EUBREC_2400: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*2
Roseburia intestinalis L1-82 Gene: ROSINTL182_03098: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Site: position = -95 score = 5.85257 sequence = ACACAATATATTGTAT Gene: ROSINTL182_03097: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Gene: RUMGNA_00011: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Ruminococcus lactaris ATCC 29176 Site: position = 19 score = 5.52515 sequence = ATACTATATTTTGTAT Site: position = 48 score = 4.12511 sequence = AGACAATATCTTGAAA Gene: RUMLAC_00868: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| nrdG |
Gene: BACPEC_00927: anaerobic ribonucleoside-triphosphate reductase activating protein |
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Gene: Cbac1_010100006823: anaerobic ribonucleoside-triphosphate reductase activating protein |
Gene: CLOBOL_02822: anaerobic ribonucleoside-triphosphate reductase activating protein |
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Gene: CLOSCI_01030: anaerobic ribonucleoside-triphosphate reductase activating protein |
Gene: DORFOR_02441: anaerobic ribonucleoside-triphosphate reductase activating protein |
Gene: DORLON_00951: anaerobic ribonucleoside-triphosphate reductase activating protein |
Gene: EUBELI_20493: anaerobic ribonucleoside-triphosphate reductase activating protein |
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Gene: RUMGNA_00010: anaerobic ribonucleoside-triphosphate reductase activating protein |
Gene: RUMLAC_00869: anaerobic ribonucleoside-triphosphate reductase activating protein |
anaerobic ribonucleoside-triphosphate reductase activating protein |
| CRON 2. | |||||||||||||||
| ligA |
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*
Blautia hansenii DSM 20583 Site: position = -123 score = 5.04546 sequence = ACACTATATATCGTTT Site: position = -153 score = 5.61079 sequence = ACACTATATGTAGTAT Site: position = -92 score = 4.8276 sequence = TTACTATATATAGAGG Gene: BLAHAN_00802: NAD-dependent DNA ligase |
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Gene: CLOSCI_03783: NAD-dependent DNA ligase |
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Ruminococcus gnavus ATCC 29149 Site: position = -153 score = 5.61079 sequence = ACACTATATGTAGTAT Site: position = -123 score = 5.04546 sequence = ACACTATATATCGTTT Site: position = -92 score = 4.8276 sequence = TTACTATATATAGAGG Gene: RUMGNA_01429: NAD-dependent DNA ligase |
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NAD-dependent DNA ligase |
| CRON 3. | |||||||||||||||
| nrdE |
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Blautia hansenii DSM 20583 Site: position = -41 score = 5.42914 sequence = ATACAAGATATAGTAT Gene: BLAHAN_01704: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Gene: Cbac1_010100012710: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: CLOBOL_02577: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Clostridium nexile DSM 1787 Site: position = -60 score = 5.07322 sequence = CAACTATATATTGTGG Site: position = -28 score = 4.98436 sequence = ATACTATAAATAGTAA Gene: CLONEX_03145: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Clostridium scindens ATCC 35704 Site: position = -64 score = 5.06548 sequence = CAACAATATATTGTGG Site: position = -33 score = 4.43605 sequence = AATCAATAAATTGTAT Gene: CLOSCI_02889: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Ruminococcus gnavus ATCC 29149 Site: position = -78 score = 4.80932 sequence = ATCCAATATCTTGTGT Site: position = -48 score = 5.27176 sequence = CCACTATATTTTGTAT Gene: RUMGNA_02624: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdF |
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Gene: BLAHAN_01705: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: Cbac1_010100012705: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: CLOBOL_02576: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: CLONEX_03144: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: CLOSCI_02888: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: RUMGNA_02625: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 4. | |||||||||||||||
| nrdD2 |
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*
Bryantella formatexigens DSM 14469 Site: position = -110 score = 4.7903 sequence = ACACTATATATTGATG Site: position = -142 score = 4.41178 sequence = ATACTCTATTTAGTAC Gene: BRYFOR_03555: Oxygen-sensitive ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
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Clostridiales bacterium 1_7_47_FAA Site: position = -144 score = 5.04969 sequence = ACACAATATCTAGTTT Site: position = -127 score = 4.10208 sequence = ACACAAAATGTTATAC Gene: Cbac1_010100017114: Oxygen-sensitive ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
Gene: CLOBOL_06849: Oxygen-sensitive ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
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Clostridium nexile DSM 1787 Site: position = -122 score = 4.33424 sequence = TAACAATATATAGGAA Site: position = -91 score = 4.90973 sequence = ACACAATATATGGTTT Gene: CLONEX_02838: Oxygen-sensitive ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
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Clostridium scindens ATCC 35704 Site: position = -96 score = 4.39897 sequence = ACACAATAAGTGGTAT Site: position = -129 score = 4.79611 sequence = GCACAATATATTGTTA Site: position = -160 score = 4.79611 sequence = TAACAATATATTGTGC Gene: CLOSCI_01639: Oxygen-sensitive ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
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Ruminococcus gnavus ATCC 29149 Site: position = -91 score = 4.0261 sequence = ATACTAGATGTTGGTG Site: position = -44 score = 4.28964 sequence = ACACTAAATACAGCGT Gene: RUMGNA_02734: Oxygen-sensitive ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
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Oxygen-sensitive ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
| COG0345 |
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Gene: BLAHAN_00380: Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
Gene: BRYFOR_04808: Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
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Gene: CLONEX_02839: Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
Gene: CLOSCI_01601: Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
Gene: DORFOR_03282: Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
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Dorea longicatena DSM 13814 Site: position = -74 score = 3.7892 sequence = ACATAACAGATTGTTT Gene: DORLON_01167: Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
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Gene: EUBREC_1178: Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
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Gene: RUMGNA_02726: Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
Gene: RUMLAC_01681: Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
| Cbac1_010100017119 |
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Gene: Cbac1_010100017119: hypothetical protein |
Gene: CLOBOL_06848: hypothetical protein |
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hypothetical protein |
| COG0492 |
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Gene: BRYFOR_01585: thioredoxin reductase |
Gene: Cbac1_010100029421: thioredoxin reductase |
Gene: CLOBOL_05920: thioredoxin reductase |
Gene: CLONEX_03825: thioredoxin reductase |
Gene: CLOSCI_01638: thioredoxin reductase |
Gene: DORFOR_00179: thioredoxin reductase |
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Gene: RUMGNA_02735: thioredoxin reductase |
Gene: RUMLAC_01680: thioredoxin reductase |
thioredoxin reductase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |