Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HrcA in Clostridium scindens ATCC 35704

Properties
Regulator type: Transcription factor
TF locus tag: CLOSCI_01188
Regulator family: HrcA
Regulation mode: repressor
Biological process: Heat shock response
Effector: Heat shock
Regulog: HrcA - Clostridia-3
Statistics of regulated genes:
- Genes 9
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 81 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -100
Score: 7.3
Sequence: TTAGCACTCAATACTTGACAGTGCTAA
Locus tag: CLOSCI_04021
Name: hsp20
Funciton: Heat shock protein Hsp20
hsp20
Heat shock protein Hsp20

Position: -94
Score: 7.2
Sequence: TTAGCACTCACCTCTTGACAGTGCTAA
Locus tag: CLOSCI_02798
Name: clpB
Funciton: ATP-dependent Clp protease ATP-binding subunit ClpB
clpB
ATP-dependent Clp protease ATP-binding subunit ClpB

Position: -397
Score: 7.5
Sequence: TTAGCACTCTCTTTTTATGAGTGCTAA
Locus tag: CLOSCI_00050
Name: groEL
Funciton: Heat shock protein 60 family chaperone GroEL
groEL
Heat shock protein 60 family chaperone GroEL

Position: -58
Score: 7.5
Sequence: TTAGCACTCTCTTTTTATGAGTGCTAA
Locus tag: CLOSCI_00049
Name: groES
Funciton: Heat shock protein 60 family co-chaperone GroES
groES
Heat shock protein 60 family co-chaperone GroES

Position: -97
Score: 7.2
Sequence: TTAGCACTCATCTATTGACAGTGCTAA
Locus tag: CLOSCI_02851
Name: hsp20
Funciton: Heat shock protein Hsp20
hsp20
Heat shock protein Hsp20

Position: -54
Score: 7.3
Sequence: TTAGCACTCGAAAATGTAGAGTGCTAA
Locus tag: CLOSCI_01188
Name: hrcA
Funciton: heat-inducible transcription repressor HrcA
Locus tag: CLOSCI_01189
Name: grpE
Funciton: Heat shock protein GrpE
Locus tag: CLOSCI_01190
Name: dnaK
Funciton: Chaperone protein DnaK
Locus tag: CLOSCI_01191
Name: dnaJ
Funciton: Chaperone protein DnaJ
hrcA
heat-inducible transcription repressor HrcA
grpE
Heat shock protein GrpE
dnaK
Chaperone protein DnaK
dnaJ
Chaperone protein DnaJ
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD