Draft regulons reconstructed by automated conservative propagation


Template (reference) regulons			Propagated regulons
Regulog collection	Genomes	TF regulons		Taxonomic group	Genomes	TF regulons
Corynebacteriaceae	8	262	➠	Corynebacteriaceae	9	234

Studied genomes and reconstructed regulon statistics
	Genomes	Regulons	Sites
*	Corynebacterium amycolatum SK46	18	63
*	Corynebacterium aurimucosum ATCC 700975	24	84
*	Corynebacterium diphtheriae NCTC 13129	20	83
*	Corynebacterium efficiens YS-314	36	123
*	Corynebacterium glutamicum ATCC 13032	42	211
	Corynebacterium glutamicum R	43	194
*	Corynebacterium jeikeium K411	18	76
*	Corynebacterium kroppenstedtii DSM 44385	16	44
*	Corynebacterium urealyticum DSM 7109	17	66

*	- reference regulons from this genome have been used as a template for the conservative propagation

Genomic distribution of propagated regulons

Reference regulog
AcnR	1 AcnR Corynebacterium amycolatum SK46	1 AcnR Corynebacterium aurimucosum ATCC 700975	-	1 AcnR Corynebacterium efficiens YS-314	1 AcnR Corynebacterium glutamicum ATCC 13032	1 AcnR Corynebacterium glutamicum R	1 AcnR Corynebacterium jeikeium K411	1 AcnR Corynebacterium kroppenstedtii DSM 44385	-
AmtR	-	1 AmtR Corynebacterium aurimucosum ATCC 700975	3 AmtR Corynebacterium diphtheriae NCTC 13129	11 AmtR Corynebacterium efficiens YS-314	13 AmtR Corynebacterium glutamicum ATCC 13032	12 AmtR Corynebacterium glutamicum R	-	-	-
ArgR	1 ArgR Corynebacterium amycolatum SK46	1 ArgR Corynebacterium aurimucosum ATCC 700975	1 ArgR Corynebacterium diphtheriae NCTC 13129	1 ArgR Corynebacterium efficiens YS-314	2 ArgR Corynebacterium glutamicum ATCC 13032	2 ArgR Corynebacterium glutamicum R	1 ArgR Corynebacterium jeikeium K411	-	1 ArgR Corynebacterium urealyticum DSM 7109
ArsR	-	2 ArsR Corynebacterium aurimucosum ATCC 700975	-	1 ArsR Corynebacterium efficiens YS-314	4 ArsR Corynebacterium glutamicum ATCC 13032	2 ArsR Corynebacterium glutamicum R	2 ArsR Corynebacterium jeikeium K411	-	2 ArsR Corynebacterium urealyticum DSM 7109
BioQ	3 BioQ Corynebacterium amycolatum SK46	2 BioQ Corynebacterium aurimucosum ATCC 700975	4 BioQ Corynebacterium diphtheriae NCTC 13129	2 BioQ Corynebacterium efficiens YS-314	3 BioQ Corynebacterium glutamicum ATCC 13032	3 BioQ Corynebacterium glutamicum R	2 BioQ Corynebacterium jeikeium K411	1 BioQ Corynebacterium kroppenstedtii DSM 44385	-
CadR	1 CadR Corynebacterium amycolatum SK46	1 CadR Corynebacterium aurimucosum ATCC 700975	-	-	1 CadR Corynebacterium glutamicum ATCC 13032	2 CadR Corynebacterium glutamicum R	1 CadR Corynebacterium jeikeium K411	1 CadR Corynebacterium kroppenstedtii DSM 44385	1 CadR Corynebacterium urealyticum DSM 7109
Cg0454	1 Cg0454 Corynebacterium amycolatum SK46	1 Cg0454 Corynebacterium aurimucosum ATCC 700975	1 Cg0454 Corynebacterium diphtheriae NCTC 13129	-	1 Cg0454 Corynebacterium glutamicum ATCC 13032	1 Cg0454 Corynebacterium glutamicum R	1 Cg0454 Corynebacterium jeikeium K411	1 Cg0454 Corynebacterium kroppenstedtii DSM 44385	1 Cg0454 Corynebacterium urealyticum DSM 7109
Cg0979	-	1 Cg0979 Corynebacterium aurimucosum ATCC 700975	-	1 Cg0979 Corynebacterium efficiens YS-314	1 Cg0979 Corynebacterium glutamicum ATCC 13032	1 Cg0979 Corynebacterium glutamicum R	-	-	-
Cg1053	-	-	-	1 Cg1053 Corynebacterium efficiens YS-314	1 Cg1053 Corynebacterium glutamicum ATCC 13032	1 Cg1053 Corynebacterium glutamicum R	1 Cg1053 Corynebacterium jeikeium K411	1 Cg1053 Corynebacterium kroppenstedtii DSM 44385	1 Cg1053 Corynebacterium urealyticum DSM 7109
Cg1211	2 Cg1211 Corynebacterium amycolatum SK46	-	-	2 Cg1211 Corynebacterium efficiens YS-314	2 Cg1211 Corynebacterium glutamicum ATCC 13032	2 Cg1211 Corynebacterium glutamicum R	-	-	-
Cg1831	-	-	-	1 Cg1831 Corynebacterium efficiens YS-314	2 Cg1831 Corynebacterium glutamicum ATCC 13032	2 Cg1831 Corynebacterium glutamicum R	-	-	-
Cg3239	-	1 Cg3239 Corynebacterium aurimucosum ATCC 700975	-	2 Cg3239 Corynebacterium efficiens YS-314	2 Cg3239 Corynebacterium glutamicum ATCC 13032	2 Cg3239 Corynebacterium glutamicum R	2 Cg3239 Corynebacterium jeikeium K411	-	-
CitB	-	-	-	2 CitB Corynebacterium efficiens YS-314	3 CitB Corynebacterium glutamicum ATCC 13032	3 CitB Corynebacterium glutamicum R	-	-	-
ClgR	4 ClgR Corynebacterium amycolatum SK46	4 ClgR Corynebacterium aurimucosum ATCC 700975	6 ClgR Corynebacterium diphtheriae NCTC 13129	4 ClgR Corynebacterium efficiens YS-314	7 ClgR Corynebacterium glutamicum ATCC 13032	7 ClgR Corynebacterium glutamicum R	4 ClgR Corynebacterium jeikeium K411	2 ClgR Corynebacterium kroppenstedtii DSM 44385	3 ClgR Corynebacterium urealyticum DSM 7109
DtxR	8 DtxR Corynebacterium amycolatum SK46	11 DtxR Corynebacterium aurimucosum ATCC 700975	22 DtxR Corynebacterium diphtheriae NCTC 13129	9 DtxR Corynebacterium efficiens YS-314	35 DtxR Corynebacterium glutamicum ATCC 13032	29 DtxR Corynebacterium glutamicum R	14 DtxR Corynebacterium jeikeium K411	3 DtxR Corynebacterium kroppenstedtii DSM 44385	11 DtxR Corynebacterium urealyticum DSM 7109
FasR	1 FasR Corynebacterium amycolatum SK46	2 FasR Corynebacterium aurimucosum ATCC 700975	2 FasR Corynebacterium diphtheriae NCTC 13129	2 FasR Corynebacterium efficiens YS-314	4 FasR Corynebacterium glutamicum ATCC 13032	4 FasR Corynebacterium glutamicum R	-	-	-
FruR	-	-	-	1 FruR Corynebacterium efficiens YS-314	2 FruR Corynebacterium glutamicum ATCC 13032	2 FruR Corynebacterium glutamicum R	-	-	-
GabR	-	5 GabR Corynebacterium aurimucosum ATCC 700975	-	-	2 GabR Corynebacterium glutamicum ATCC 13032	2 GabR Corynebacterium glutamicum R	-	-	-
GenR	-	-	-	2 GenR Corynebacterium efficiens YS-314	3 GenR Corynebacterium glutamicum ATCC 13032	1 GenR Corynebacterium glutamicum R	-	-	-
GntR	-	-	-	3 GntR Corynebacterium efficiens YS-314	6 GntR Corynebacterium glutamicum ATCC 13032	6 GntR Corynebacterium glutamicum R	-	1 GntR Corynebacterium kroppenstedtii DSM 44385	-
HrcA	2 HrcA Corynebacterium amycolatum SK46	2 HrcA Corynebacterium aurimucosum ATCC 700975	2 HrcA Corynebacterium diphtheriae NCTC 13129	2 HrcA Corynebacterium efficiens YS-314	2 HrcA Corynebacterium glutamicum ATCC 13032	2 HrcA Corynebacterium glutamicum R	2 HrcA Corynebacterium jeikeium K411	1 HrcA Corynebacterium kroppenstedtii DSM 44385	1 HrcA Corynebacterium urealyticum DSM 7109
HspR	1 HspR Corynebacterium amycolatum SK46	2 HspR Corynebacterium aurimucosum ATCC 700975	2 HspR Corynebacterium diphtheriae NCTC 13129	2 HspR Corynebacterium efficiens YS-314	2 HspR Corynebacterium glutamicum ATCC 13032	2 HspR Corynebacterium glutamicum R	3 HspR Corynebacterium jeikeium K411	3 HspR Corynebacterium kroppenstedtii DSM 44385	1 HspR Corynebacterium urealyticum DSM 7109
IolR2	-	-	-	-	2 IolR2 Corynebacterium glutamicum ATCC 13032	2 IolR2 Corynebacterium glutamicum R	-	-	-
LexA	8 LexA Corynebacterium amycolatum SK46	7 LexA Corynebacterium aurimucosum ATCC 700975	8 LexA Corynebacterium diphtheriae NCTC 13129	13 LexA Corynebacterium efficiens YS-314	22 LexA Corynebacterium glutamicum ATCC 13032	19 LexA Corynebacterium glutamicum R	7 LexA Corynebacterium jeikeium K411	6 LexA Corynebacterium kroppenstedtii DSM 44385	6 LexA Corynebacterium urealyticum DSM 7109
LldR	-	-	2 LldR Corynebacterium diphtheriae NCTC 13129	2 LldR Corynebacterium efficiens YS-314	3 LldR Corynebacterium glutamicum ATCC 13032	3 LldR Corynebacterium glutamicum R	-	-	-
LysG	-	1 LysG Corynebacterium aurimucosum ATCC 700975	1 LysG Corynebacterium diphtheriae NCTC 13129	1 LysG Corynebacterium efficiens YS-314	1 LysG Corynebacterium glutamicum ATCC 13032	1 LysG Corynebacterium glutamicum R	-	-	-
McbR	13 McbR Corynebacterium amycolatum SK46	15 McbR Corynebacterium aurimucosum ATCC 700975	9 McbR Corynebacterium diphtheriae NCTC 13129	14 McbR Corynebacterium efficiens YS-314	23 McbR Corynebacterium glutamicum ATCC 13032	20 McbR Corynebacterium glutamicum R	14 McbR Corynebacterium jeikeium K411	10 McbR Corynebacterium kroppenstedtii DSM 44385	13 McbR Corynebacterium urealyticum DSM 7109
MntR	1 MntR Corynebacterium amycolatum SK46	2 MntR Corynebacterium aurimucosum ATCC 700975	1 MntR Corynebacterium diphtheriae NCTC 13129	1 MntR Corynebacterium efficiens YS-314	1 MntR Corynebacterium glutamicum ATCC 13032	1 MntR Corynebacterium glutamicum R	3 MntR Corynebacterium jeikeium K411	3 MntR Corynebacterium kroppenstedtii DSM 44385	1 MntR Corynebacterium urealyticum DSM 7109
NrtR	-	-	1 NrtR Corynebacterium diphtheriae NCTC 13129	1 NrtR Corynebacterium efficiens YS-314	1 NrtR Corynebacterium glutamicum ATCC 13032	1 NrtR Corynebacterium glutamicum R	-	-	1 NrtR Corynebacterium urealyticum DSM 7109
PaaR	-	-	-	5 PaaR Corynebacterium efficiens YS-314	-	3 PaaR Corynebacterium glutamicum R	-	-	-
PcaO	-	-	-	1 PcaO Corynebacterium efficiens YS-314	1 PcaO Corynebacterium glutamicum ATCC 13032	1 PcaO Corynebacterium glutamicum R	-	-	-
PcaR	-	-	-	3 PcaR Corynebacterium efficiens YS-314	4 PcaR Corynebacterium glutamicum ATCC 13032	4 PcaR Corynebacterium glutamicum R	-	-	-
QacR	1 QacR Corynebacterium amycolatum SK46	1 QacR Corynebacterium aurimucosum ATCC 700975	-	-	1 QacR Corynebacterium glutamicum ATCC 13032	1 QacR Corynebacterium glutamicum R	-	-	1 QacR Corynebacterium urealyticum DSM 7109
QorR	-	-	-	-	2 QorR Corynebacterium glutamicum ATCC 13032	2 QorR Corynebacterium glutamicum R	-	-	-
QsuR	-	-	-	2 QsuR Corynebacterium efficiens YS-314	2 QsuR Corynebacterium glutamicum ATCC 13032	2 QsuR Corynebacterium glutamicum R	-	-	-
RbsR	-	-	1 RbsR Corynebacterium diphtheriae NCTC 13129	2 RbsR Corynebacterium efficiens YS-314	3 RbsR Corynebacterium glutamicum ATCC 13032	3 RbsR Corynebacterium glutamicum R	-	-	-
RosR	3 RosR Corynebacterium amycolatum SK46	4 RosR Corynebacterium aurimucosum ATCC 700975	3 RosR Corynebacterium diphtheriae NCTC 13129	6 RosR Corynebacterium efficiens YS-314	10 RosR Corynebacterium glutamicum ATCC 13032	9 RosR Corynebacterium glutamicum R	3 RosR Corynebacterium jeikeium K411	4 RosR Corynebacterium kroppenstedtii DSM 44385	4 RosR Corynebacterium urealyticum DSM 7109
SufR	1 SufR Corynebacterium amycolatum SK46	1 SufR Corynebacterium aurimucosum ATCC 700975	1 SufR Corynebacterium diphtheriae NCTC 13129	1 SufR Corynebacterium efficiens YS-314	1 SufR Corynebacterium glutamicum ATCC 13032	1 SufR Corynebacterium glutamicum R	1 SufR Corynebacterium jeikeium K411	1 SufR Corynebacterium kroppenstedtii DSM 44385	1 SufR Corynebacterium urealyticum DSM 7109
SutR	-	-	-	1 SutR Corynebacterium efficiens YS-314	1 SutR Corynebacterium glutamicum ATCC 13032	1 SutR Corynebacterium glutamicum R	-	-	-
UriR	-	-	-	1 UriR Corynebacterium efficiens YS-314	2 UriR Corynebacterium glutamicum ATCC 13032	2 UriR Corynebacterium glutamicum R	-	-	-
VanR	-	-	-	-	2 VanR Corynebacterium glutamicum ATCC 13032	1 VanR Corynebacterium glutamicum R	-	-	-
Znr	-	1 Znr Corynebacterium aurimucosum ATCC 700975	1 Znr Corynebacterium diphtheriae NCTC 13129	1 Znr Corynebacterium efficiens YS-314	1 Znr Corynebacterium glutamicum ATCC 13032	1 Znr Corynebacterium glutamicum R	-	-	-
Zur	3 Zur Corynebacterium amycolatum SK46	4 Zur Corynebacterium aurimucosum ATCC 700975	4 Zur Corynebacterium diphtheriae NCTC 13129	1 Zur Corynebacterium efficiens YS-314	7 Zur Corynebacterium glutamicum ATCC 13032	6 Zur Corynebacterium glutamicum R	2 Zur Corynebacterium jeikeium K411	2 Zur Corynebacterium kroppenstedtii DSM 44385	4 Zur Corynebacterium urealyticum DSM 7109

-- Legend --

5	Orthologous regulator is detected and five members of regulon are predicted in a target genome
-	Orthologous regulator is detected in a target genome but no potential members of regulon where identified
3	Three potential members of regulon were found, but orthologous regulator could not be detected in a target genome.
3	Neither orthologous regulator no potential members of regulon were found in a target genome

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Draft regulons reconstructed by automated conservative propagation

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --