Draft regulons reconstructed by automated conservative propagation
| Template (reference) regulons | Propagated regulons | |||||
|---|---|---|---|---|---|---|
| Regulog collection | Genomes | TF regulons | Taxonomic group | Genomes | TF regulons | |
| Corynebacteriaceae | 8 | 262 | ➠ | Corynebacteriaceae | 9 | 234 |
| Genomes | Regulons | Sites | |
|---|---|---|---|
| * | Corynebacterium amycolatum SK46 | 18 | 63 |
| * | Corynebacterium aurimucosum ATCC 700975 | 24 | 84 |
| * | Corynebacterium diphtheriae NCTC 13129 | 20 | 83 |
| * | Corynebacterium efficiens YS-314 | 36 | 123 |
| * | Corynebacterium glutamicum ATCC 13032 | 42 | 211 |
| Corynebacterium glutamicum R | 43 | 194 | |
| * | Corynebacterium jeikeium K411 | 18 | 76 |
| * | Corynebacterium kroppenstedtii DSM 44385 | 16 | 44 |
| * | Corynebacterium urealyticum DSM 7109 | 17 | 66 |
| * | - reference regulons from this genome have been used as a template for the conservative propagation |
Genomic distribution of propagated regulons
| Reference regulog | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| AcnR |
1
AcnR
Corynebacterium amycolatum SK46 |
1
AcnR
Corynebacterium aurimucosum ATCC 700975 |
- |
1
AcnR
Corynebacterium efficiens YS-314 |
1
AcnR
Corynebacterium glutamicum ATCC 13032 |
1
AcnR
Corynebacterium glutamicum R |
1
AcnR
Corynebacterium jeikeium K411 |
1
AcnR
Corynebacterium kroppenstedtii DSM 44385 |
- |
| AmtR | - |
1
AmtR
Corynebacterium aurimucosum ATCC 700975 |
3
AmtR
Corynebacterium diphtheriae NCTC 13129 |
11
AmtR
Corynebacterium efficiens YS-314 |
13
AmtR
Corynebacterium glutamicum ATCC 13032 |
12
AmtR
Corynebacterium glutamicum R |
- | - | - |
| ArgR |
1
ArgR
Corynebacterium amycolatum SK46 |
1
ArgR
Corynebacterium aurimucosum ATCC 700975 |
1
ArgR
Corynebacterium diphtheriae NCTC 13129 |
1
ArgR
Corynebacterium efficiens YS-314 |
2
ArgR
Corynebacterium glutamicum ATCC 13032 |
2
ArgR
Corynebacterium glutamicum R |
1
ArgR
Corynebacterium jeikeium K411 |
- |
1
ArgR
Corynebacterium urealyticum DSM 7109 |
| ArsR | - |
2
ArsR
Corynebacterium aurimucosum ATCC 700975 |
- |
1
ArsR
Corynebacterium efficiens YS-314 |
4
ArsR
Corynebacterium glutamicum ATCC 13032 |
2
ArsR
Corynebacterium glutamicum R |
2
ArsR
Corynebacterium jeikeium K411 |
- |
2
ArsR
Corynebacterium urealyticum DSM 7109 |
| BioQ |
3
BioQ
Corynebacterium amycolatum SK46 |
2
BioQ
Corynebacterium aurimucosum ATCC 700975 |
4
BioQ
Corynebacterium diphtheriae NCTC 13129 |
2
BioQ
Corynebacterium efficiens YS-314 |
3
BioQ
Corynebacterium glutamicum ATCC 13032 |
3
BioQ
Corynebacterium glutamicum R |
2
BioQ
Corynebacterium jeikeium K411 |
1
BioQ
Corynebacterium kroppenstedtii DSM 44385 |
- |
| CadR |
1
CadR
Corynebacterium amycolatum SK46 |
1
CadR
Corynebacterium aurimucosum ATCC 700975 |
- | - |
1
CadR
Corynebacterium glutamicum ATCC 13032 |
2
CadR
Corynebacterium glutamicum R |
1
CadR
Corynebacterium jeikeium K411 |
1
CadR
Corynebacterium kroppenstedtii DSM 44385 |
1
CadR
Corynebacterium urealyticum DSM 7109 |
| Cg0454 |
1
Cg0454
Corynebacterium amycolatum SK46 |
1
Cg0454
Corynebacterium aurimucosum ATCC 700975 |
1
Cg0454
Corynebacterium diphtheriae NCTC 13129 |
- |
1
Cg0454
Corynebacterium glutamicum ATCC 13032 |
1
Cg0454
Corynebacterium glutamicum R |
1
Cg0454
Corynebacterium jeikeium K411 |
1
Cg0454
Corynebacterium kroppenstedtii DSM 44385 |
1
Cg0454
Corynebacterium urealyticum DSM 7109 |
| Cg0979 | - |
1
Cg0979
Corynebacterium aurimucosum ATCC 700975 |
- |
1
Cg0979
Corynebacterium efficiens YS-314 |
1
Cg0979
Corynebacterium glutamicum ATCC 13032 |
1
Cg0979
Corynebacterium glutamicum R |
- | - | - |
| Cg1053 | - | - | - |
1
Cg1053
Corynebacterium efficiens YS-314 |
1
Cg1053
Corynebacterium glutamicum ATCC 13032 |
1
Cg1053
Corynebacterium glutamicum R |
1
Cg1053
Corynebacterium jeikeium K411 |
1
Cg1053
Corynebacterium kroppenstedtii DSM 44385 |
1
Cg1053
Corynebacterium urealyticum DSM 7109 |
| Cg1211 |
2
Cg1211
Corynebacterium amycolatum SK46 |
- | - |
2
Cg1211
Corynebacterium efficiens YS-314 |
2
Cg1211
Corynebacterium glutamicum ATCC 13032 |
2
Cg1211
Corynebacterium glutamicum R |
- | - | - |
| Cg1831 | - | - | - |
1
Cg1831
Corynebacterium efficiens YS-314 |
2
Cg1831
Corynebacterium glutamicum ATCC 13032 |
2
Cg1831
Corynebacterium glutamicum R |
- | - | - |
| Cg3239 | - |
1
Cg3239
Corynebacterium aurimucosum ATCC 700975 |
- |
2
Cg3239
Corynebacterium efficiens YS-314 |
2
Cg3239
Corynebacterium glutamicum ATCC 13032 |
2
Cg3239
Corynebacterium glutamicum R |
2
Cg3239
Corynebacterium jeikeium K411 |
- | - |
| CitB | - | - | - |
2
CitB
Corynebacterium efficiens YS-314 |
3
CitB
Corynebacterium glutamicum ATCC 13032 |
3
CitB
Corynebacterium glutamicum R |
- | - | - |
| ClgR |
4
ClgR
Corynebacterium amycolatum SK46 |
4
ClgR
Corynebacterium aurimucosum ATCC 700975 |
6
ClgR
Corynebacterium diphtheriae NCTC 13129 |
4
ClgR
Corynebacterium efficiens YS-314 |
7
ClgR
Corynebacterium glutamicum ATCC 13032 |
7
ClgR
Corynebacterium glutamicum R |
4
ClgR
Corynebacterium jeikeium K411 |
2
ClgR
Corynebacterium kroppenstedtii DSM 44385 |
3
ClgR
Corynebacterium urealyticum DSM 7109 |
| DtxR |
8
DtxR
Corynebacterium amycolatum SK46 |
11
DtxR
Corynebacterium aurimucosum ATCC 700975 |
22
DtxR
Corynebacterium diphtheriae NCTC 13129 |
9
DtxR
Corynebacterium efficiens YS-314 |
35
DtxR
Corynebacterium glutamicum ATCC 13032 |
29
DtxR
Corynebacterium glutamicum R |
14
DtxR
Corynebacterium jeikeium K411 |
3
DtxR
Corynebacterium kroppenstedtii DSM 44385 |
11
DtxR
Corynebacterium urealyticum DSM 7109 |
| FasR |
1
FasR
Corynebacterium amycolatum SK46 |
2
FasR
Corynebacterium aurimucosum ATCC 700975 |
2
FasR
Corynebacterium diphtheriae NCTC 13129 |
2
FasR
Corynebacterium efficiens YS-314 |
4
FasR
Corynebacterium glutamicum ATCC 13032 |
4
FasR
Corynebacterium glutamicum R |
- | - | - |
| FruR | - | - | - |
1
FruR
Corynebacterium efficiens YS-314 |
2
FruR
Corynebacterium glutamicum ATCC 13032 |
2
FruR
Corynebacterium glutamicum R |
- | - | - |
| GabR | - |
5
GabR
Corynebacterium aurimucosum ATCC 700975 |
- | - |
2
GabR
Corynebacterium glutamicum ATCC 13032 |
2
GabR
Corynebacterium glutamicum R |
- | - | - |
| GenR | - | - | - |
2
GenR
Corynebacterium efficiens YS-314 |
3
GenR
Corynebacterium glutamicum ATCC 13032 |
1
GenR
Corynebacterium glutamicum R |
- | - | - |
| GntR | - | - | - |
3
GntR
Corynebacterium efficiens YS-314 |
6
GntR
Corynebacterium glutamicum ATCC 13032 |
6
GntR
Corynebacterium glutamicum R |
- |
1
GntR
Corynebacterium kroppenstedtii DSM 44385 |
- |
| HrcA |
2
HrcA
Corynebacterium amycolatum SK46 |
2
HrcA
Corynebacterium aurimucosum ATCC 700975 |
2
HrcA
Corynebacterium diphtheriae NCTC 13129 |
2
HrcA
Corynebacterium efficiens YS-314 |
2
HrcA
Corynebacterium glutamicum ATCC 13032 |
2
HrcA
Corynebacterium glutamicum R |
2
HrcA
Corynebacterium jeikeium K411 |
1
HrcA
Corynebacterium kroppenstedtii DSM 44385 |
1
HrcA
Corynebacterium urealyticum DSM 7109 |
| HspR |
1
HspR
Corynebacterium amycolatum SK46 |
2
HspR
Corynebacterium aurimucosum ATCC 700975 |
2
HspR
Corynebacterium diphtheriae NCTC 13129 |
2
HspR
Corynebacterium efficiens YS-314 |
2
HspR
Corynebacterium glutamicum ATCC 13032 |
2
HspR
Corynebacterium glutamicum R |
3
HspR
Corynebacterium jeikeium K411 |
3
HspR
Corynebacterium kroppenstedtii DSM 44385 |
1
HspR
Corynebacterium urealyticum DSM 7109 |
| IolR2 | - | - | - | - |
2
IolR2
Corynebacterium glutamicum ATCC 13032 |
2
IolR2
Corynebacterium glutamicum R |
- | - | - |
| LexA |
8
LexA
Corynebacterium amycolatum SK46 |
7
LexA
Corynebacterium aurimucosum ATCC 700975 |
8
LexA
Corynebacterium diphtheriae NCTC 13129 |
13
LexA
Corynebacterium efficiens YS-314 |
22
LexA
Corynebacterium glutamicum ATCC 13032 |
19
LexA
Corynebacterium glutamicum R |
7
LexA
Corynebacterium jeikeium K411 |
6
LexA
Corynebacterium kroppenstedtii DSM 44385 |
6
LexA
Corynebacterium urealyticum DSM 7109 |
| LldR | - | - |
2
LldR
Corynebacterium diphtheriae NCTC 13129 |
2
LldR
Corynebacterium efficiens YS-314 |
3
LldR
Corynebacterium glutamicum ATCC 13032 |
3
LldR
Corynebacterium glutamicum R |
- | - | - |
| LysG | - |
1
LysG
Corynebacterium aurimucosum ATCC 700975 |
1
LysG
Corynebacterium diphtheriae NCTC 13129 |
1
LysG
Corynebacterium efficiens YS-314 |
1
LysG
Corynebacterium glutamicum ATCC 13032 |
1
LysG
Corynebacterium glutamicum R |
- | - | - |
| McbR |
13
McbR
Corynebacterium amycolatum SK46 |
15
McbR
Corynebacterium aurimucosum ATCC 700975 |
9
McbR
Corynebacterium diphtheriae NCTC 13129 |
14
McbR
Corynebacterium efficiens YS-314 |
23
McbR
Corynebacterium glutamicum ATCC 13032 |
20
McbR
Corynebacterium glutamicum R |
14
McbR
Corynebacterium jeikeium K411 |
10
McbR
Corynebacterium kroppenstedtii DSM 44385 |
13
McbR
Corynebacterium urealyticum DSM 7109 |
| MntR |
1
MntR
Corynebacterium amycolatum SK46 |
2
MntR
Corynebacterium aurimucosum ATCC 700975 |
1
MntR
Corynebacterium diphtheriae NCTC 13129 |
1
MntR
Corynebacterium efficiens YS-314 |
1
MntR
Corynebacterium glutamicum ATCC 13032 |
1
MntR
Corynebacterium glutamicum R |
3
MntR
Corynebacterium jeikeium K411 |
3
MntR
Corynebacterium kroppenstedtii DSM 44385 |
1
MntR
Corynebacterium urealyticum DSM 7109 |
| NrtR | - | - |
1
NrtR
Corynebacterium diphtheriae NCTC 13129 |
1
NrtR
Corynebacterium efficiens YS-314 |
1
NrtR
Corynebacterium glutamicum ATCC 13032 |
1
NrtR
Corynebacterium glutamicum R |
- | - |
1
NrtR
Corynebacterium urealyticum DSM 7109 |
| PaaR | - | - | - |
5
PaaR
Corynebacterium efficiens YS-314 |
- |
3
PaaR
Corynebacterium glutamicum R |
- | - | - |
| PcaO | - | - | - |
1
PcaO
Corynebacterium efficiens YS-314 |
1
PcaO
Corynebacterium glutamicum ATCC 13032 |
1
PcaO
Corynebacterium glutamicum R |
- | - | - |
| PcaR | - | - | - |
3
PcaR
Corynebacterium efficiens YS-314 |
4
PcaR
Corynebacterium glutamicum ATCC 13032 |
4
PcaR
Corynebacterium glutamicum R |
- | - | - |
| QacR |
1
QacR
Corynebacterium amycolatum SK46 |
1
QacR
Corynebacterium aurimucosum ATCC 700975 |
- | - |
1
QacR
Corynebacterium glutamicum ATCC 13032 |
1
QacR
Corynebacterium glutamicum R |
- | - |
1
QacR
Corynebacterium urealyticum DSM 7109 |
| QorR | - | - | - | - |
2
QorR
Corynebacterium glutamicum ATCC 13032 |
2
QorR
Corynebacterium glutamicum R |
- | - | - |
| QsuR | - | - | - |
2
QsuR
Corynebacterium efficiens YS-314 |
2
QsuR
Corynebacterium glutamicum ATCC 13032 |
2
QsuR
Corynebacterium glutamicum R |
- | - | - |
| RbsR | - | - |
1
RbsR
Corynebacterium diphtheriae NCTC 13129 |
2
RbsR
Corynebacterium efficiens YS-314 |
3
RbsR
Corynebacterium glutamicum ATCC 13032 |
3
RbsR
Corynebacterium glutamicum R |
- | - | - |
| RosR |
3
RosR
Corynebacterium amycolatum SK46 |
4
RosR
Corynebacterium aurimucosum ATCC 700975 |
3
RosR
Corynebacterium diphtheriae NCTC 13129 |
6
RosR
Corynebacterium efficiens YS-314 |
10
RosR
Corynebacterium glutamicum ATCC 13032 |
9
RosR
Corynebacterium glutamicum R |
3
RosR
Corynebacterium jeikeium K411 |
4
RosR
Corynebacterium kroppenstedtii DSM 44385 |
4
RosR
Corynebacterium urealyticum DSM 7109 |
| SufR |
1
SufR
Corynebacterium amycolatum SK46 |
1
SufR
Corynebacterium aurimucosum ATCC 700975 |
1
SufR
Corynebacterium diphtheriae NCTC 13129 |
1
SufR
Corynebacterium efficiens YS-314 |
1
SufR
Corynebacterium glutamicum ATCC 13032 |
1
SufR
Corynebacterium glutamicum R |
1
SufR
Corynebacterium jeikeium K411 |
1
SufR
Corynebacterium kroppenstedtii DSM 44385 |
1
SufR
Corynebacterium urealyticum DSM 7109 |
| SutR | - | - | - |
1
SutR
Corynebacterium efficiens YS-314 |
1
SutR
Corynebacterium glutamicum ATCC 13032 |
1
SutR
Corynebacterium glutamicum R |
- | - | - |
| UriR | - | - | - |
1
UriR
Corynebacterium efficiens YS-314 |
2
UriR
Corynebacterium glutamicum ATCC 13032 |
2
UriR
Corynebacterium glutamicum R |
- | - | - |
| VanR | - | - | - | - |
2
VanR
Corynebacterium glutamicum ATCC 13032 |
1
VanR
Corynebacterium glutamicum R |
- | - | - |
| Znr | - |
1
Znr
Corynebacterium aurimucosum ATCC 700975 |
1
Znr
Corynebacterium diphtheriae NCTC 13129 |
1
Znr
Corynebacterium efficiens YS-314 |
1
Znr
Corynebacterium glutamicum ATCC 13032 |
1
Znr
Corynebacterium glutamicum R |
- | - | - |
| Zur |
3
Zur
Corynebacterium amycolatum SK46 |
4
Zur
Corynebacterium aurimucosum ATCC 700975 |
4
Zur
Corynebacterium diphtheriae NCTC 13129 |
1
Zur
Corynebacterium efficiens YS-314 |
7
Zur
Corynebacterium glutamicum ATCC 13032 |
6
Zur
Corynebacterium glutamicum R |
2
Zur
Corynebacterium jeikeium K411 |
2
Zur
Corynebacterium kroppenstedtii DSM 44385 |
4
Zur
Corynebacterium urealyticum DSM 7109 |
| 5 | Orthologous regulator is detected and five members of regulon are predicted in a target genome |
| - | Orthologous regulator is detected in a target genome but no potential members of regulon where identified |
| 3 | Three potential members of regulon were found, but orthologous regulator could not be detected in a target genome. |
| 3 | Neither orthologous regulator no potential members of regulon were found in a target genome |