Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Corynebacterium amycolatum SK46

Reference regulog properties
Source regulog: LexA - Corynebacteriaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Actinobacteria
Propagated regulon:
Target genome Corynebacterium amycolatum SK46
Orthologous TF(s) CORAM0001_0857
Regulated genes 10
Built upon 109 sites [see more]
Predicted regulatory interactions in Corynebacterium amycolatum SK46
Locus tag Position Score Sequence
Position: -227
Score: 4.4
Sequence: TCAAACGACTGTTCGA
Locus tag: CORAM0001_0857
CORAM0001_0857 -227 4.4 TCAAACGACTGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor LexA
Corynebacterium glutamicum ATCC 13032 cg2114 -270 4.1 CCGTTCACATGTTCGA
-190 4.4 TCGAACACTCGTACCA
Corynebacterium efficiens YS-314 CE1823 -209 4.7 TCGTTCACATGTTCGA
-130 4.4 TCGAACACTCGTACCA
Corynebacterium diphtheriae NCTC 13129 DIP1426 -268 4.9 TCGACAACATGTTCGA
Corynebacterium jeikeium K411 jk1106 -164 5 TAGATCACGTGTTCTA
-126 4.4 TAGCACGCTTGTTCGA
-84 4.6 TCGAACACATATACTA
Corynebacterium urealyticum DSM 7109 cur_0884 -103 5.4 TCGAACGGGTGTTCTA
-68 4.3 TAGCACGCACGTTCGA
Corynebacterium aurimucosum ATCC 700975 cauri_1477 -204 4.2 TCGACCAACCGTTCGA
-124 4.2 TCGAACATTTTTTCCT
Corynebacterium amycolatum SK46 CORAM0001_0857 -227 4.4 TCAAACGACTGTTCGA
Corynebacterium kroppenstedtii DSM 44385 ckrop_1088 -213 4 TCGAACATGTGCGATC
Position: -140
Score: 4
Sequence: TCGAACAGGGTTTCGC
Locus tag: CORAM0001_0838
CORAM0001_0838 -140 4 TCGAACAGGGTTTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombination protein RecA
Corynebacterium glutamicum ATCC 13032 cg2141 -240 5 TCGAACAGTTGTGCGT
Corynebacterium efficiens YS-314 CE1849 -213 5 TCGAACAGTTGTGCGT
Corynebacterium diphtheriae NCTC 13129 DIP1450 -204 4.9 TCGAACATGTATTCGT
Corynebacterium jeikeium K411 jk1116 -175 4.6 TCGAACAAAGGTTCGT
Corynebacterium urealyticum DSM 7109 cur_0874 -307 4.6 TCGAACAAAGGTTCGT
Corynebacterium aurimucosum ATCC 700975 cauri_1500 -211 4.5 TCGAACACTTGTGTGT
Corynebacterium amycolatum SK46 CORAM0001_0838 -140 4 TCGAACAGGGTTTCGC
Corynebacterium kroppenstedtii DSM 44385 ckrop_1113 -245 4.5 TCGAACATACGTTTGC
Position: -141
Score: 5.2
Sequence: TCGAACACGCGTGCTA
Locus tag: CORAM0001_0623
CORAM0001_0623 -141 5.2 TCGAACACGCGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: helZ
Ortholog function: SNF2 family DNA/RNA helicase
Corynebacterium amycolatum SK46 CORAM0001_0623 -141 5.2 TCGAACACGCGTGCTA
Corynebacterium kroppenstedtii DSM 44385 ckrop_1305 -117 5.6 TCGAAAATATGTTCGA
Position: -101
Score: 5.2
Sequence: TCGAATGGATGTTCGA
Locus tag: CORAM0001_0615
CORAM0001_0615 -101 5.2 TCGAATGGATGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: modC
Ortholog function: Modification methylase NgoMIV (EC 2.1.1.37)
Corynebacterium jeikeium K411 jk1858 -125 4.7 TAGAGCATATGTTCTA
Corynebacterium amycolatum SK46 CORAM0001_0615 -101 5.2 TCGAATGGATGTTCGA
Position: -49
Score: 4.8
Sequence: TCGAAAATACGTTTGA
Locus tag: CORAM0001_0285
CORAM0001_0285 -49 4.8 TCGAAAATACGTTTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnaE2
Ortholog function: Error-prone DNA polymerase
Corynebacterium glutamicum ATCC 13032 cg0738 -19 5.1 TGGAAAATTTGTTCTA
Corynebacterium efficiens YS-314 CE0632 -26 4.7 TGGAAAGAATGTTCTA
Corynebacterium diphtheriae NCTC 13129 DIP0612 -32 4.2 GTGAACATGTGTGTGA
Corynebacterium jeikeium K411 jk1709 -8 5.2 TAGAATATGTGTTCTA
Corynebacterium urealyticum DSM 7109 cur_0412 -36 5.4 TCGAATAGATGTTCGA
Corynebacterium aurimucosum ATCC 700975 cauri_0500 -33 5.2 TGGAATACATGTTCGA
Corynebacterium amycolatum SK46 CORAM0001_0285 -49 4.8 TCGAAAATACGTTTGA
Corynebacterium kroppenstedtii DSM 44385 ckrop_0333 -191 5 TCGAACACGCGTACTA
Position: -89
Score: 5
Sequence: TCGAACGTACGTGCTA
Locus tag: CORAM0001_0278
CORAM0001_0278 -89 5 TCGAACGTACGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cg0713
Ortholog function: Conserved hypothetical protein
Corynebacterium glutamicum ATCC 13032 cg0713 -40 5.5 TGGAACAGGTGTTCGA
Corynebacterium efficiens YS-314 CE0627 5 5.4 TGGAACACATGTTCTA
Corynebacterium jeikeium K411 jk1717 -99 5.4 TAGAACACGTGTTCTA
Corynebacterium urealyticum DSM 7109 cur_0403 -165 5.1 TAGAACACCTGTTCGA
Corynebacterium aurimucosum ATCC 700975 cauri_0492 -16 4.8 TCAAACAGGTGTTCGT
Corynebacterium amycolatum SK46 CORAM0001_0278 -89 5 TCGAACGTACGTGCTA
Position: -63
Score: 4.1
Sequence: ACAAACAGCTGTTCGA
Locus tag: CORAM0001_2122
CORAM0001_2122 -63 4.1 ACAAACAGCTGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ruvC
Ortholog function: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Corynebacterium glutamicum ATCC 13032 cg1871 -104 4.2 TCGCAATTGTGTGCTA
Corynebacterium efficiens YS-314 CE1775 -37 4.1 TCGCAATTATGTGCTA
Corynebacterium diphtheriae NCTC 13129 DIP1377 -123 4.1 TCGCAATTATGTGCTA
Corynebacterium jeikeium K411 jk1056 -30 4.7 TAAAACACGTGTGCTA
Corynebacterium urealyticum DSM 7109 cur_0934 -52 5.2 TCGATCATGTGTGCTA
Corynebacterium aurimucosum ATCC 700975 cauri_1419 -10 4.4 TAGAACACATGTGTGT
Corynebacterium amycolatum SK46 CORAM0001_2122 -63 4.1 ACAAACAGCTGTTCGA
Position: -79
Score: 4.5
Sequence: CTGAACACATGTGCGA
Locus tag: CORAM0001_1690
CORAM0001_1690 -79 4.5 CTGAACACATGTGCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrA
Ortholog function: Excinuclease ABC, subunit A
Corynebacterium glutamicum ATCC 13032 cg1560 -66 4.5 TCGATGCTATGTTCGA
Corynebacterium efficiens YS-314 CE1507 -76 4.3 TCGTTGGTATGTTCGA
Corynebacterium diphtheriae NCTC 13129 DIP1159 -145 4.3 TCGGTAGTATGTTCGA
Corynebacterium amycolatum SK46 CORAM0001_1690 -79 4.5 CTGAACACATGTGCGA
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