Regulog CitB - Corynebacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	CitB
Regulation mode:	activator
Biological process:	Citrate utilization
Effector:	Citrate
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Corynebacteriaceae
By TF family - CitB
By effector - Citrate
By pathway - Citrate utilization

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314	3	2
Corynebacterium glutamicum ATCC 13032	6	3
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
citH	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -35 score = 6.00283 sequence = GAACTAAATGCACTTAATTC Gene: CE2906: Citrate transporter	* Corynebacterium glutamicum ATCC 13032 Site: position = -148 score = 5.70863 sequence = GATCATAATGCACAAAAGTC Gene: cg0088: Citrate transporter	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Citrate transporter

CRON 2.
citA	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -81 score = 5.7749 sequence = GAATTAAGTGCATTTAGTTC Gene: CE2905: Citrate transport regulation two-component system histidine kinase	* Corynebacterium glutamicum ATCC 13032 Site: position = -80 score = 5.24241 sequence = GACTTTTGTGCATTATGATC Gene: cg0089: Citrate transport regulation two-component system histidine kinase	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Citrate transport regulation two-component system histidine kinase
citB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2904: Citrate transport regulation two-component system response regulator, LuxR family	Corynebacterium glutamicum ATCC 13032 Gene: cg0090: Citrate transport regulation two-component system response regulator, LuxR family	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Citrate transport regulation two-component system response regulator, LuxR family

CRON 3.
tctC	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	* Corynebacterium glutamicum ATCC 13032 Site: position = -43 score = 5.14334 sequence = GAGCTTGTTGTCCAAAAGTC Gene: cg3127: Citrate TTT family transporter, subunit C	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Citrate TTT family transporter, subunit C
tctB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg3126: Citrate TTT family transporter, subunit B	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Citrate TTT family transporter, subunit B
tctA	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg3125: Citrate TTT family transporter, subunit A	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Citrate TTT family transporter, subunit A

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog CitB - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --