Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Corynebacterium diphtheriae NCTC 13129

Reference regulog properties
Source regulog: LexA - Corynebacteriaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Actinobacteria
Propagated regulon:
Target genome Corynebacterium diphtheriae NCTC 13129
Orthologous TF(s) DIP1426
Regulated genes 11
Built upon 109 sites [see more]
Predicted regulatory interactions in Corynebacterium diphtheriae NCTC 13129
Locus tag Position Score Sequence
Position: -32
Score: 4.2
Sequence: GTGAACATGTGTGTGA
Locus tag: DIP0612
DIP0612 -32 4.2 GTGAACATGTGTGTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnaE2
Ortholog function: Error-prone DNA polymerase
Corynebacterium glutamicum ATCC 13032 cg0738 -19 5.1 TGGAAAATTTGTTCTA
Corynebacterium efficiens YS-314 CE0632 -26 4.7 TGGAAAGAATGTTCTA
Corynebacterium diphtheriae NCTC 13129 DIP0612 -32 4.2 GTGAACATGTGTGTGA
Corynebacterium jeikeium K411 jk1709 -8 5.2 TAGAATATGTGTTCTA
Corynebacterium urealyticum DSM 7109 cur_0412 -36 5.4 TCGAATAGATGTTCGA
Corynebacterium aurimucosum ATCC 700975 cauri_0500 -33 5.2 TGGAATACATGTTCGA
Corynebacterium amycolatum SK46 CORAM0001_0285 -49 4.8 TCGAAAATACGTTTGA
Corynebacterium kroppenstedtii DSM 44385 ckrop_0333 -191 5 TCGAACACGCGTACTA
Position: -145
Score: 4.3
Sequence: TCGGTAGTATGTTCGA
Locus tag: DIP1159
DIP1159 -145 4.3 TCGGTAGTATGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrA
Ortholog function: Excinuclease ABC, subunit A
Corynebacterium glutamicum ATCC 13032 cg1560 -66 4.5 TCGATGCTATGTTCGA
Corynebacterium efficiens YS-314 CE1507 -76 4.3 TCGTTGGTATGTTCGA
Corynebacterium diphtheriae NCTC 13129 DIP1159 -145 4.3 TCGGTAGTATGTTCGA
Corynebacterium amycolatum SK46 CORAM0001_1690 -79 4.5 CTGAACACATGTGCGA
Position: -47
Score: 4.2
Sequence: TAGAACACCTGTTCCT
Locus tag: DIP1182
DIP1182 -47 4.2 TAGAACACCTGTTCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Corynebacterium glutamicum ATCC 13032 cg1602 -49 4.2 TAGAAAAAACGTTCGC
Corynebacterium efficiens YS-314 CE1548 -107 4.6 TCGGATGTGTGTGCGA
Corynebacterium diphtheriae NCTC 13129 DIP1182 -47 4.2 TAGAACACCTGTTCCT
Position: -123
Score: 4.1
Sequence: TCGCAATTATGTGCTA
Locus tag: DIP1377
DIP1377 -123 4.1 TCGCAATTATGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ruvC
Ortholog function: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Corynebacterium glutamicum ATCC 13032 cg1871 -104 4.2 TCGCAATTGTGTGCTA
Corynebacterium efficiens YS-314 CE1775 -37 4.1 TCGCAATTATGTGCTA
Corynebacterium diphtheriae NCTC 13129 DIP1377 -123 4.1 TCGCAATTATGTGCTA
Corynebacterium jeikeium K411 jk1056 -30 4.7 TAAAACACGTGTGCTA
Corynebacterium urealyticum DSM 7109 cur_0934 -52 5.2 TCGATCATGTGTGCTA
Corynebacterium aurimucosum ATCC 700975 cauri_1419 -10 4.4 TAGAACACATGTGTGT
Corynebacterium amycolatum SK46 CORAM0001_2122 -63 4.1 ACAAACAGCTGTTCGA
Position: -268
Score: 4.9
Sequence: TCGACAACATGTTCGA
Locus tag: DIP1426
DIP1426 -268 4.9 TCGACAACATGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor LexA
Corynebacterium glutamicum ATCC 13032 cg2114 -270 4.1 CCGTTCACATGTTCGA
-190 4.4 TCGAACACTCGTACCA
Corynebacterium efficiens YS-314 CE1823 -209 4.7 TCGTTCACATGTTCGA
-130 4.4 TCGAACACTCGTACCA
Corynebacterium diphtheriae NCTC 13129 DIP1426 -268 4.9 TCGACAACATGTTCGA
Corynebacterium jeikeium K411 jk1106 -164 5 TAGATCACGTGTTCTA
-126 4.4 TAGCACGCTTGTTCGA
-84 4.6 TCGAACACATATACTA
Corynebacterium urealyticum DSM 7109 cur_0884 -103 5.4 TCGAACGGGTGTTCTA
-68 4.3 TAGCACGCACGTTCGA
Corynebacterium aurimucosum ATCC 700975 cauri_1477 -204 4.2 TCGACCAACCGTTCGA
-124 4.2 TCGAACATTTTTTCCT
Corynebacterium amycolatum SK46 CORAM0001_0857 -227 4.4 TCAAACGACTGTTCGA
Corynebacterium kroppenstedtii DSM 44385 ckrop_1088 -213 4 TCGAACATGTGCGATC
Position: -204
Score: 4.9
Sequence: TCGAACATGTATTCGT
Locus tag: DIP1450
DIP1450 -204 4.9 TCGAACATGTATTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombination protein RecA
Corynebacterium glutamicum ATCC 13032 cg2141 -240 5 TCGAACAGTTGTGCGT
Corynebacterium efficiens YS-314 CE1849 -213 5 TCGAACAGTTGTGCGT
Corynebacterium diphtheriae NCTC 13129 DIP1450 -204 4.9 TCGAACATGTATTCGT
Corynebacterium jeikeium K411 jk1116 -175 4.6 TCGAACAAAGGTTCGT
Corynebacterium urealyticum DSM 7109 cur_0874 -307 4.6 TCGAACAAAGGTTCGT
Corynebacterium aurimucosum ATCC 700975 cauri_1500 -211 4.5 TCGAACACTTGTGTGT
Corynebacterium amycolatum SK46 CORAM0001_0838 -140 4 TCGAACAGGGTTTCGC
Corynebacterium kroppenstedtii DSM 44385 ckrop_1113 -245 4.5 TCGAACATACGTTTGC
Position: 31
Score: 4.8
Sequence: TCGAACAAACGTTCCA
Locus tag: DIP1609
DIP1609 31 4.8 TCGAACAAACGTTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cg2381
Ortholog function: Conserved hypothetical protein
Corynebacterium glutamicum ATCC 13032 cg2381 -122 5.1 TCAAATATGTGTTCGA
Corynebacterium efficiens YS-314 CE2064 -6 5.1 TAGAAAGTGTGTTCTA
Corynebacterium diphtheriae NCTC 13129 DIP1609 31 4.8 TCGAACAAACGTTCCA
Corynebacterium jeikeium K411 jk0739 -111 5.5 TGGAACATGTGTTCTA
Corynebacterium urealyticum DSM 7109 cur_1216 -88 5.5 TAGAACACGTGTTCGA
Corynebacterium aurimucosum ATCC 700975 cauri_1681 -145 4.7 TCGAACACCTGCTCTA
Corynebacterium kroppenstedtii DSM 44385 ckrop_0735 -179 4.9 TCGAATATAAGTTCGA
Position: -37
Score: 3.5
Sequence: TCGATCGAATGTCATA
Locus tag: DIP1977
DIP1977 -37 3.5 TCGATCGAATGTCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: radA
Ortholog function: DNA repair protein RadA
Corynebacterium glutamicum ATCC 13032 cg2950 -48 3.5 TCGAACACCGTTTCTC
Corynebacterium efficiens YS-314 CE2524 -35 4.4 TCGAACATGTTTTTGT
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