Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PaaR regulog to Corynebacterium glutamicum R

Reference regulog properties
Source regulog: PaaR - Corynebacteriaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Actinobacteria
Propagated regulon:
Target genome Corynebacterium glutamicum R
Orthologous TF(s) cgR_0645
Regulated genes 4
Built upon 14 sites [see more]
Predicted regulatory interactions in Corynebacterium glutamicum R
Locus tag Position Score Sequence
Position: -208
Score: 6.3
Sequence: ACTGACCGGAAGGTCGGTAAGT
Locus tag: cgR_0644
cgR_0644 -208 6.3 ACTGACCGGAAGGTCGGTAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaK
Ortholog function: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Corynebacterium efficiens YS-314 CE0663 -180 5 ACCAACTTACCGACTGGTCAGT
-176 5.1 ACTTACCGACTGGTCAGTTGGT
-172 4.6 ACCGACTGGTCAGTTGGTAAAT
Position: -51
Score: 6.4
Sequence: CCTGACCGAACGATCGGTAATT
Locus tag: cgR_0647
cgR_0647 -51 6.4 CCTGACCGAACGATCGGTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaA
Ortholog function: Phenylacetate-CoA oxygenase, PaaA subunit
Corynebacterium efficiens YS-314 CE0667 -132 4.6 ATATACTGACCGGGCGGTCGGT
-128 6.4 ACTGACCGGGCGGTCGGTTAGT
Position: -52
Score: 6.9
Sequence: ACTTACCGTACGGTCGGTAAGT
Locus tag: cgR_0657
cgR_0657 -52 6.9 ACTTACCGTACGGTCGGTAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaZ
Ortholog function: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Corynebacterium efficiens YS-314 CE0677 -125 5.1 AATTACTGACCGGCCGTTCGGT
-121 6 ACTGACCGGCCGTTCGGTAACT