Regulog PaaR - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By trascription factor - PaaR
- By TF family - TetR
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | ||
| Corynebacterium aurimucosum ATCC 700975 | ||
| Corynebacterium diphtheriae NCTC 13129 | ||
| Corynebacterium efficiens YS-314 | 18 | 7 |
| Corynebacterium glutamicum ATCC 13032 | ||
| Corynebacterium jeikeium K411 | ||
| Corynebacterium kroppenstedtii DSM 44385 | ||
| Corynebacterium urealyticum DSM 7109 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| paaA |
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Corynebacterium efficiens YS-314 Site: position = -128 score = 6.3943 sequence = ACTGACCGGGCGGTCGGTTAGT Site: position = -132 score = 4.56481 sequence = ATATACTGACCGGGCGGTCGGT Gene: CE0667: Phenylacetate-CoA oxygenase, PaaA subunit |
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Phenylacetate-CoA oxygenase, PaaA subunit |
| paaB |
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Gene: CE0668: Phenylacetate-CoA oxygenase, PaaB subunit |
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Phenylacetate-CoA oxygenase, PaaB subunit |
| paaC |
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Gene: CE0669: Phenylacetate-CoA oxygenase, PaaC subunit |
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Phenylacetate-CoA oxygenase, PaaC subunit |
| paaD |
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Gene: CE0670: Phenylacetate-CoA oxygenase, PaaD subunit |
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Phenylacetate-CoA oxygenase, PaaD subunit |
| paaE |
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Gene: CE0671: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-) |
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Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-) |
| paaG |
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Gene: CE0672: Enoyl-CoA hydratase (EC 4.2.1.17) |
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Enoyl-CoA hydratase (EC 4.2.1.17) |
| paaJ |
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Gene: CE0673: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
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Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
| paaF |
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Gene: CE0674: Enoyl-CoA hydratase (EC 4.2.1.17) |
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Enoyl-CoA hydratase (EC 4.2.1.17) |
| paaH |
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Gene: CE0675: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
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3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
| CRON 2. | |||||||||
| paaK |
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Corynebacterium efficiens YS-314 Site: position = -180 score = 4.9823 sequence = ACCAACTTACCGACTGGTCAGT Site: position = -176 score = 5.13171 sequence = ACTTACCGACTGGTCAGTTGGT Site: position = -172 score = 4.57525 sequence = ACCGACTGGTCAGTTGGTAAAT Gene: CE0663: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
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Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
| paaT |
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Gene: CE0662: predicted phylacetic acid transporter |
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predicted phylacetic acid transporter |
| CRON 3. | |||||||||
| paaI |
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Corynebacterium efficiens YS-314 Site: position = -58 score = 5.35932 sequence = TACTACCGTCCATTCGGTAAGT Gene: CE0666: Phenylacetic acid degradation protein PaaI, thioesterase |
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Phenylacetic acid degradation protein PaaI, thioesterase |
| CRON 4. | |||||||||
| paaZ |
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Corynebacterium efficiens YS-314 Site: position = -121 score = 5.96546 sequence = ACTGACCGGCCGTTCGGTAACT Site: position = -125 score = 5.08965 sequence = AATTACTGACCGGCCGTTCGGT Gene: CE0677: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
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Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
| CRON 5. | |||||||||
| paaY |
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Corynebacterium efficiens YS-314 Site: position = -47 score = 6.58933 sequence = AGTTACCGAACGGCCGGTCAGT Site: position = -43 score = 5.15048 sequence = ACCGAACGGCCGGTCAGTAATT Gene: CE0676: hypothetical protein |
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hypothetical protein |
| CRON 6. | |||||||||
| hisE |
Gene: CORAM0001_0989: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) |
Gene: cauri_1253: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) |
Gene: DIP1257: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) |
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Corynebacterium efficiens YS-314 Site: position = -23 score = 6.01175 sequence = AACAACCGCACGATCGGTATGT Gene: CE1635: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) |
Gene: cg1699: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) |
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Gene: ckrop_0917: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) |
Gene: cur_1034: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) |
Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) |
| hisG |
Gene: CORAM0001_0990: ATP phosphoribosyltransferase (EC 2.4.2.17) |
Gene: cauri_1254: ATP phosphoribosyltransferase (EC 2.4.2.17) |
Gene: DIP1256: ATP phosphoribosyltransferase (EC 2.4.2.17) |
Gene: CE1634: ATP phosphoribosyltransferase (EC 2.4.2.17) |
Gene: cg1698: ATP phosphoribosyltransferase (EC 2.4.2.17) |
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Gene: ckrop_0916: ATP phosphoribosyltransferase (EC 2.4.2.17) |
Gene: cur_1035: ATP phosphoribosyltransferase (EC 2.4.2.17) |
ATP phosphoribosyltransferase (EC 2.4.2.17) |
| aspA |
Gene: CORAM0001_0991: Aspartate ammonia-lyase (EC 4.3.1.1) |
Gene: cauri_1255: Aspartate ammonia-lyase (EC 4.3.1.1) |
Gene: DIP1254: Aspartate ammonia-lyase (EC 4.3.1.1) |
Gene: CE1633: Aspartate ammonia-lyase (EC 4.3.1.1) |
Gene: cg1697: Aspartate ammonia-lyase (EC 4.3.1.1) |
Gene: jk0951: Aspartate ammonia-lyase (EC 4.3.1.1) |
Gene: ckrop_1567: Aspartate ammonia-lyase (EC 4.3.1.1) |
Gene: cur_1036: Aspartate ammonia-lyase (EC 4.3.1.1) |
Aspartate ammonia-lyase (EC 4.3.1.1) |
| CRON 7. | |||||||||
| paaR |
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Corynebacterium efficiens YS-314 Site: position = 38 score = 4.67642 sequence = ACTTACCGAATGGACGGTAGTA Site: position = -595 score = 5.17828 sequence = ACCGACCGCCCGGTCAGTATAT Site: position = -599 score = 6.20474 sequence = ACTAACCGACCGCCCGGTCAGT Gene: CE0665: Transcriptional regulator of phenylacetic acid degradation, TetR family |
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Transcriptional regulator of phenylacetic acid degradation, TetR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |