Regulon of PaaR in Corynebacterium efficiens YS-314
| Regulator type: | Transcription factor |
| TF locus tag: | CE0665 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Regulog: | PaaR - Corynebacteriaceae |
| Statistics of regulated genes: | |
| - Genes | 18 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By trascription factor - PaaR
- By TF family - TetR
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -132
Score: 4.6 Sequence: ATATACTGACCGGGCGGTCGGT
Position: -128
Score: 6.4 Sequence: ACTGACCGGGCGGTCGGTTAGT
Locus tag: CE0667
Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: CE0668
Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: CE0669
Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: CE0670
Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: CE0671
Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: CE0672
Name: paaG Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: CE0673
Name: paaJ Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: CE0674
Name: paaF Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: CE0675
Name: paaH Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
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paaA
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Phenylacetate-CoA oxygenase, PaaA subunit
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paaB
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Phenylacetate-CoA oxygenase, PaaB subunit
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paaC
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Phenylacetate-CoA oxygenase, PaaC subunit
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paaD
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Phenylacetate-CoA oxygenase, PaaD subunit
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paaE
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Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
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paaG
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Enoyl-CoA hydratase (EC 4.2.1.17)
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paaJ
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Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
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paaF
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Enoyl-CoA hydratase (EC 4.2.1.17)
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paaH
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3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
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Position: -180
Score: 5 Sequence: ACCAACTTACCGACTGGTCAGT
Position: -176
Score: 5.1 Sequence: ACTTACCGACTGGTCAGTTGGT
Position: -172
Score: 4.6 Sequence: ACCGACTGGTCAGTTGGTAAAT
Locus tag: CE0663
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: CE0662
Name: paaT Funciton: predicted phylacetic acid transporter |
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paaK
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Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
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paaT
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predicted phylacetic acid transporter
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Position: -47
Score: 6.6 Sequence: AGTTACCGAACGGCCGGTCAGT
Position: -43
Score: 5.2 Sequence: ACCGAACGGCCGGTCAGTAATT
Locus tag: CE0676
Name: paaY Funciton: hypothetical protein |
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paaY
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hypothetical protein
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Position: -23
Score: 6 Sequence: AACAACCGCACGATCGGTATGT
Locus tag: CE1635
Name: hisE Funciton: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
Locus tag: CE1634
Name: hisG Funciton: ATP phosphoribosyltransferase (EC 2.4.2.17)
Locus tag: CE1633
Name: aspA Funciton: Aspartate ammonia-lyase (EC 4.3.1.1) |
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hisE
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Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
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hisG
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ATP phosphoribosyltransferase (EC 2.4.2.17)
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aspA
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Aspartate ammonia-lyase (EC 4.3.1.1)
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Position: -58
Score: 5.4 Sequence: TACTACCGTCCATTCGGTAAGT
Locus tag: CE0666
Name: paaI Funciton: Phenylacetic acid degradation protein PaaI, thioesterase |
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paaI
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Phenylacetic acid degradation protein PaaI, thioesterase
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Position: -125
Score: 5.1 Sequence: AATTACTGACCGGCCGTTCGGT
Position: -121
Score: 6 Sequence: ACTGACCGGCCGTTCGGTAACT
Locus tag: CE0677
Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
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paaZ
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Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
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Position: -599
Score: 6.2 Sequence: ACTAACCGACCGCCCGGTCAGT
Position: -595
Score: 5.2 Sequence: ACCGACCGCCCGGTCAGTATAT
Position: 38
Score: 4.7 Sequence: ACTTACCGAATGGACGGTAGTA
Locus tag: CE0665
Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family |
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paaR
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Transcriptional regulator of phenylacetic acid degradation, TetR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |