Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of ClgR regulog to Corynebacterium amycolatum SK46

Reference regulog properties
Source regulog: ClgR - Corynebacteriaceae
Regulator type: Transcription factor
Regulator family: XRE
Regulation mode: activator
Biological process: Proteolysis
Effector: DNA damage
Phylum: Actinobacteria
Propagated regulon:
Target genome Corynebacterium amycolatum SK46
Orthologous TF(s) CORAM0001_0832
Regulated genes 4
Built upon 39 sites [see more]
Predicted regulatory interactions in Corynebacterium amycolatum SK46
Locus tag Position Score Sequence
Position: -111
Score: 5.5
Sequence: GTTCGCTACTGGCGTAC
Locus tag: CORAM0001_1267
CORAM0001_1267 -111 5.5 GTTCGCTACTGGCGTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpC
Ortholog function: Clp protease
Corynebacterium amycolatum SK46 CORAM0001_1267 -111 5.5 GTTCGCTACTGGCGTAC
Corynebacterium aurimucosum ATCC 700975 cauri_2229 -133 5.7 GTTCGCTACCGGCGTAC
Corynebacterium diphtheriae NCTC 13129 DIP1983 -152 5.6 GTTCGCTGCTGGCGTAC
Corynebacterium efficiens YS-314 CE2529 -175 5.5 GTTCGCTACAGGCGTAC
Corynebacterium glutamicum ATCC 13032 cg2963 -176 5.5 GTTCGCTACAGGCGTAC
Corynebacterium jeikeium K411 jk0299 -209 5.9 GTTCGCTGACGGCGTAC
Corynebacterium kroppenstedtii DSM 44385 ckrop_0337 -274 5.7 GTTCGCTCCCGGCGTAC
Corynebacterium urealyticum DSM 7109 cur_1684 -202 5.4 GTTCGCTAGGGGCGTAC
Position: -79
Score: 4.7
Sequence: CTTCGCGCCCAGCGAAC
Locus tag: CORAM0001_1222
CORAM0001_1222 -79 4.7 CTTCGCGCCCAGCGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ylbL
Ortholog function: Lon-like protease with PDZ domain
Corynebacterium amycolatum SK46 CORAM0001_1222 -79 4.7 CTTCGCGCCCAGCGAAC
Corynebacterium aurimucosum ATCC 700975 cauri_0706 -47 4.8 CAACGCTGAGAGCGAAC
Corynebacterium diphtheriae NCTC 13129 DIP0730 -34 4.8 CAACGCTGTCAGCGAAC
Corynebacterium efficiens YS-314 CE0799 -30 4.8 CAACGCTGTCAGCGAAC
Corynebacterium glutamicum ATCC 13032 cg0893 -39 4.5 CAACGCTGTAAGCGAAC
Corynebacterium jeikeium K411 jk1605 -76 4.8 GTGTGCTGAGAGCGAAC
Corynebacterium urealyticum DSM 7109 cur_0510 -127 4.5 GTGTGCTGTGAGCGAAC
Position: -77
Score: 4.9
Sequence: GTTCGCTGGGCGCGAAG
Locus tag: CORAM0001_1223
CORAM0001_1223 -77 4.9 GTTCGCTGGGCGCGAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cg0892
Ortholog function: Conserved hypothetical protein
Corynebacterium amycolatum SK46 CORAM0001_1223 -77 4.9 GTTCGCTGGGCGCGAAG
Corynebacterium aurimucosum ATCC 700975 cauri_0705 9 5.3 GTTCGCTCTCAGCGTTG
Corynebacterium diphtheriae NCTC 13129 DIP0729 -63 5.7 GTTCGCTGACAGCGTTG
Corynebacterium efficiens YS-314 CE0798 -54 5.7 GTTCGCTGACAGCGTTG
Corynebacterium glutamicum ATCC 13032 cg0892 -42 5.4 GTTCGCTTACAGCGTTG
Corynebacterium jeikeium K411 jk1606 -75 4.9 GTTCGCTCTCAGCACAC
Corynebacterium urealyticum DSM 7109 cur_0509 24 5.2 GTTCGCTCACAGCACAC
Position: -107
Score: 4.5
Sequence: CAACGCTTATAGCGAAC
Locus tag: CORAM0001_0005
CORAM0001_0005 -107 4.5 CAACGCTTATAGCGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpP1
Ortholog function: Clp protease (subunit 1)
Corynebacterium amycolatum SK46 CORAM0001_0005 -107 4.5 CAACGCTTATAGCGAAC
Corynebacterium aurimucosum ATCC 700975 cauri_1890 -91 4.7 CAACGCTCATAGCGAAC
Corynebacterium diphtheriae NCTC 13129 DIP1792 -107 4.7 CGACGCTGAGAGCGAAC
Corynebacterium efficiens YS-314 CE2312 -107 4.5 AAACGCTGTTAGCGAAC
Corynebacterium glutamicum ATCC 13032 cg2645 -110 4.7 AAACGCTGATAGCGAAC
Corynebacterium jeikeium K411 jk0544 -111 5.6 GTGCGCTGACAGCGAAC
Corynebacterium kroppenstedtii DSM 44385 ckrop_1372 -98 5.2 GCACGCTAACAGCGAAC
Corynebacterium urealyticum DSM 7109 cur_1380 -102 5.1 GTGCGCTTAAAGCGAAC
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