Propagation of ClgR regulog to Corynebacterium amycolatum SK46
| Source regulog: | ClgR - Corynebacteriaceae |
| Regulator type: | Transcription factor |
| Regulator family: | XRE |
| Regulation mode: | activator |
| Biological process: | Proteolysis |
| Effector: | DNA damage |
| Phylum: | Actinobacteria |
| Propagated regulon: | |
| Target genome | Corynebacterium amycolatum SK46 |
| Orthologous TF(s) | CORAM0001_0832 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -111
Score: 5.5 Sequence: GTTCGCTACTGGCGTAC
Locus tag: CORAM0001_1267
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| CORAM0001_1267 | -111 | 5.5 | GTTCGCTACTGGCGTAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpC | ||||
| Ortholog function: Clp protease | ||||
| Corynebacterium amycolatum SK46 | CORAM0001_1267 | -111 | 5.5 | GTTCGCTACTGGCGTAC |
| Corynebacterium aurimucosum ATCC 700975 | cauri_2229 | -133 | 5.7 | GTTCGCTACCGGCGTAC |
| Corynebacterium diphtheriae NCTC 13129 | DIP1983 | -152 | 5.6 | GTTCGCTGCTGGCGTAC |
| Corynebacterium efficiens YS-314 | CE2529 | -175 | 5.5 | GTTCGCTACAGGCGTAC |
| Corynebacterium glutamicum ATCC 13032 | cg2963 | -176 | 5.5 | GTTCGCTACAGGCGTAC |
| Corynebacterium jeikeium K411 | jk0299 | -209 | 5.9 | GTTCGCTGACGGCGTAC |
| Corynebacterium kroppenstedtii DSM 44385 | ckrop_0337 | -274 | 5.7 | GTTCGCTCCCGGCGTAC |
| Corynebacterium urealyticum DSM 7109 | cur_1684 | -202 | 5.4 | GTTCGCTAGGGGCGTAC |
|
Position: -79
Score: 4.7 Sequence: CTTCGCGCCCAGCGAAC
Locus tag: CORAM0001_1222
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| CORAM0001_1222 | -79 | 4.7 | CTTCGCGCCCAGCGAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ylbL | ||||
| Ortholog function: Lon-like protease with PDZ domain | ||||
| Corynebacterium amycolatum SK46 | CORAM0001_1222 | -79 | 4.7 | CTTCGCGCCCAGCGAAC |
| Corynebacterium aurimucosum ATCC 700975 | cauri_0706 | -47 | 4.8 | CAACGCTGAGAGCGAAC |
| Corynebacterium diphtheriae NCTC 13129 | DIP0730 | -34 | 4.8 | CAACGCTGTCAGCGAAC |
| Corynebacterium efficiens YS-314 | CE0799 | -30 | 4.8 | CAACGCTGTCAGCGAAC |
| Corynebacterium glutamicum ATCC 13032 | cg0893 | -39 | 4.5 | CAACGCTGTAAGCGAAC |
| Corynebacterium jeikeium K411 | jk1605 | -76 | 4.8 | GTGTGCTGAGAGCGAAC |
| Corynebacterium urealyticum DSM 7109 | cur_0510 | -127 | 4.5 | GTGTGCTGTGAGCGAAC |
|
Position: -77
Score: 4.9 Sequence: GTTCGCTGGGCGCGAAG
Locus tag: CORAM0001_1223
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| CORAM0001_1223 | -77 | 4.9 | GTTCGCTGGGCGCGAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cg0892 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Corynebacterium amycolatum SK46 | CORAM0001_1223 | -77 | 4.9 | GTTCGCTGGGCGCGAAG |
| Corynebacterium aurimucosum ATCC 700975 | cauri_0705 | 9 | 5.3 | GTTCGCTCTCAGCGTTG |
| Corynebacterium diphtheriae NCTC 13129 | DIP0729 | -63 | 5.7 | GTTCGCTGACAGCGTTG |
| Corynebacterium efficiens YS-314 | CE0798 | -54 | 5.7 | GTTCGCTGACAGCGTTG |
| Corynebacterium glutamicum ATCC 13032 | cg0892 | -42 | 5.4 | GTTCGCTTACAGCGTTG |
| Corynebacterium jeikeium K411 | jk1606 | -75 | 4.9 | GTTCGCTCTCAGCACAC |
| Corynebacterium urealyticum DSM 7109 | cur_0509 | 24 | 5.2 | GTTCGCTCACAGCACAC |
|
Position: -107
Score: 4.5 Sequence: CAACGCTTATAGCGAAC
Locus tag: CORAM0001_0005
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| CORAM0001_0005 | -107 | 4.5 | CAACGCTTATAGCGAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpP1 | ||||
| Ortholog function: Clp protease (subunit 1) | ||||
| Corynebacterium amycolatum SK46 | CORAM0001_0005 | -107 | 4.5 | CAACGCTTATAGCGAAC |
| Corynebacterium aurimucosum ATCC 700975 | cauri_1890 | -91 | 4.7 | CAACGCTCATAGCGAAC |
| Corynebacterium diphtheriae NCTC 13129 | DIP1792 | -107 | 4.7 | CGACGCTGAGAGCGAAC |
| Corynebacterium efficiens YS-314 | CE2312 | -107 | 4.5 | AAACGCTGTTAGCGAAC |
| Corynebacterium glutamicum ATCC 13032 | cg2645 | -110 | 4.7 | AAACGCTGATAGCGAAC |
| Corynebacterium jeikeium K411 | jk0544 | -111 | 5.6 | GTGCGCTGACAGCGAAC |
| Corynebacterium kroppenstedtii DSM 44385 | ckrop_1372 | -98 | 5.2 | GCACGCTAACAGCGAAC |
| Corynebacterium urealyticum DSM 7109 | cur_1380 | -102 | 5.1 | GTGCGCTTAAAGCGAAC |