Regulog ClgR - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | XRE |
| Regulation mode: | activator |
| Biological process: | Proteolysis |
| Effector: | DNA damage |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By TF family - XRE
- By effector - DNA damage
- By pathway - Proteolysis
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | 5 | 4 |
| Corynebacterium aurimucosum ATCC 700975 | 6 | 5 |
| Corynebacterium diphtheriae NCTC 13129 | 7 | 6 |
| Corynebacterium efficiens YS-314 | 8 | 6 |
| Corynebacterium glutamicum ATCC 13032 | 9 | 7 |
| Corynebacterium jeikeium K411 | 7 | 5 |
| Corynebacterium kroppenstedtii DSM 44385 | 3 | 2 |
| Corynebacterium urealyticum DSM 7109 | 5 | 4 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| groL2 |
Gene: CORAM0001_1328: Heat shock protein 60 family chaperone GroEL |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -210 score = 5.33902 sequence = GTTCGCTTATAGCGTTC Gene: cauri_2263: Heat shock protein 60 family chaperone GroEL |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -238 score = 4.45551 sequence = TTACGCTGACAGCGATA Gene: DIP2020: Heat shock protein 60 family chaperone GroEL |
Gene: CE2561: Heat shock protein 60 family chaperone GroEL |
Gene: cg3011: Heat shock protein 60 family chaperone GroEL |
Gene: jk0267: Heat shock protein 60 family chaperone GroEL |
Gene: ckrop_1667: Heat shock protein 60 family chaperone GroEL |
Gene: cur_1716: Heat shock protein 60 family chaperone GroEL |
Heat shock protein 60 family chaperone GroEL |
| CRON 2. | |||||||||
| hflX |
Gene: CORAM0001_0851: GTPase |
Gene: cauri_1484: GTPase |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -72 score = 4.79406 sequence = GTTCGCTGTCAGCGAGA Gene: DIP1439: GTPase |
*
Corynebacterium efficiens YS-314 Site: position = -64 score = 5.46282 sequence = GTTCGCTACCAGCGTTG Gene: CE1833: GTPase |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -65 score = 5.11574 sequence = GATCGCTCACGGCGTTG Gene: cg2126: GTPase |
Gene: jk1108: GTPase |
Gene: ckrop_1096: GTPase |
Gene: cur_0881: GTPase |
GTPase |
| CRON 3. | |||||||||
| ptrB |
Gene: CORAM0001_1410: Prolyl oligopeptidase |
Gene: cauri_2184: Prolyl oligopeptidase |
Gene: DIP1926: Prolyl oligopeptidase |
Gene: CE2486: Prolyl oligopeptidase |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -59 score = 4.00276 sequence = TGTCGCCAATGGCGAAC Gene: cg2873: Prolyl oligopeptidase |
Gene: jk0351: Prolyl oligopeptidase |
Gene: ckrop_0370: Prolyl oligopeptidase |
Gene: cur_1624: Prolyl oligopeptidase |
Prolyl oligopeptidase |
| CRON 4. | |||||||||
| cg0297 |
Gene: CORAM0001_2095: Conserved hypothetical protein |
Gene: cauri_0175: Conserved hypothetical protein |
Gene: DIP0260: Conserved hypothetical protein |
*
Corynebacterium efficiens YS-314 Site: position = -61 score = 4.75542 sequence = GTAAGCCGAGAGCGAAC Gene: CE0210: Conserved hypothetical protein |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -99 score = 4.75542 sequence = GTAAGCCGAGAGCGAAC Gene: cg0297: Conserved hypothetical protein |
*
Corynebacterium jeikeium K411 Site: position = -126 score = 4.59708 sequence = GTTCGCTAAGCGTGAAC Gene: jk2011: Conserved hypothetical protein |
Gene: ckrop_0143: Conserved hypothetical protein |
Gene: cur_1912: Conserved hypothetical protein |
Conserved hypothetical protein |
| recR |
Gene: CORAM0001_2094: Recombination protein RecR |
Gene: cauri_0176: Recombination protein RecR |
Gene: DIP0261: Recombination protein RecR |
Gene: CE0211: Recombination protein RecR |
Gene: cg0298: Recombination protein RecR |
Gene: jk2010: Recombination protein RecR |
Gene: ckrop_0142: Recombination protein RecR |
Gene: cur_1911: Recombination protein RecR |
Recombination protein RecR |
| CRON 5. | |||||||||
| ylbL |
*
Corynebacterium amycolatum SK46 Site: position = -79 score = 4.66253 sequence = CTTCGCGCCCAGCGAAC Gene: CORAM0001_1222: Lon-like protease with PDZ domain |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -47 score = 4.8483 sequence = CAACGCTGAGAGCGAAC Gene: cauri_0706: Lon-like protease with PDZ domain |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -34 score = 4.7657 sequence = CAACGCTGTCAGCGAAC Gene: DIP0730: Lon-like protease with PDZ domain |
*
Corynebacterium efficiens YS-314 Site: position = -30 score = 4.7657 sequence = CAACGCTGTCAGCGAAC Gene: CE0799: Lon-like protease with PDZ domain |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -39 score = 4.50077 sequence = CAACGCTGTAAGCGAAC Gene: cg0893: Lon-like protease with PDZ domain |
*
Corynebacterium jeikeium K411 Site: position = -76 score = 4.75787 sequence = GTGTGCTGAGAGCGAAC Gene: jk1605: Lon-like protease with PDZ domain |
Gene: ckrop_1469: Lon-like protease with PDZ domain |
*
Corynebacterium urealyticum DSM 7109 Site: position = -127 score = 4.49294 sequence = GTGTGCTGTGAGCGAAC Gene: cur_0510: Lon-like protease with PDZ domain |
Lon-like protease with PDZ domain |
| CRON 6. | |||||||||
| clpP1 |
*
Corynebacterium amycolatum SK46 Site: position = -107 score = 4.53062 sequence = CAACGCTTATAGCGAAC Gene: CORAM0001_0005: Clp protease (subunit 1) |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -91 score = 4.70408 sequence = CAACGCTCATAGCGAAC Gene: cauri_1890: Clp protease (subunit 1) |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -107 score = 4.70142 sequence = CGACGCTGAGAGCGAAC Gene: DIP1792: Clp protease (subunit 1) |
*
Corynebacterium efficiens YS-314 Site: position = -107 score = 4.45941 sequence = AAACGCTGTTAGCGAAC Gene: CE2312: Clp protease (subunit 1) |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -110 score = 4.72434 sequence = AAACGCTGATAGCGAAC Gene: cg2645: Clp protease (subunit 1) |
*
Corynebacterium jeikeium K411 Site: position = -111 score = 5.61438 sequence = GTGCGCTGACAGCGAAC Gene: jk0544: Clp protease (subunit 1) |
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -98 score = 5.22025 sequence = GCACGCTAACAGCGAAC Gene: ckrop_1372: Clp protease (subunit 1) |
*
Corynebacterium urealyticum DSM 7109 Site: position = -102 score = 5.0687 sequence = GTGCGCTTAAAGCGAAC Gene: cur_1380: Clp protease (subunit 1) |
Clp protease (subunit 1) |
| clpP2 |
Gene: CORAM0001_0006: Clp protease (subunit 2) |
Gene: cauri_1889: Clp protease (subunit 2) |
Gene: DIP1791: Clp protease (subunit 2) |
Gene: CE2311: Clp protease (subunit 2) |
Gene: cg2644: Clp protease (subunit 2) |
Gene: jk0545: Clp protease (subunit 2) |
Gene: ckrop_1371: Clp protease (subunit 2) |
Gene: cur_1379: Clp protease (subunit 2) |
Clp protease (subunit 2) |
| CRON 7. | |||||||||
| cg0892 |
*
Corynebacterium amycolatum SK46 Site: position = -77 score = 4.87102 sequence = GTTCGCTGGGCGCGAAG Gene: CORAM0001_1223: Conserved hypothetical protein |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = 9 score = 5.29576 sequence = GTTCGCTCTCAGCGTTG Gene: cauri_0705: Conserved hypothetical protein |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -63 score = 5.66797 sequence = GTTCGCTGACAGCGTTG Gene: DIP0729: Conserved hypothetical protein |
*
Corynebacterium efficiens YS-314 Site: position = -54 score = 5.66797 sequence = GTTCGCTGACAGCGTTG Gene: CE0798: Conserved hypothetical protein |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -42 score = 5.38722 sequence = GTTCGCTTACAGCGTTG Gene: cg0892: Conserved hypothetical protein |
*
Corynebacterium jeikeium K411 Site: position = -75 score = 4.92485 sequence = GTTCGCTCTCAGCACAC Gene: jk1606: Conserved hypothetical protein |
Gene: ckrop_1470: Conserved hypothetical protein |
*
Corynebacterium urealyticum DSM 7109 Site: position = 24 score = 5.18978 sequence = GTTCGCTCACAGCACAC Gene: cur_0509: Conserved hypothetical protein |
Conserved hypothetical protein |
| CRON 8. | |||||||||
| clpC |
*
Corynebacterium amycolatum SK46 Site: position = -111 score = 5.5177 sequence = GTTCGCTACTGGCGTAC Gene: CORAM0001_1267: Clp protease |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -133 score = 5.73696 sequence = GTTCGCTACCGGCGTAC Gene: cauri_2229: Clp protease |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -152 score = 5.59826 sequence = GTTCGCTGCTGGCGTAC Gene: DIP1983: Clp protease |
*
Corynebacterium efficiens YS-314 Site: position = -175 score = 5.47203 sequence = GTTCGCTACAGGCGTAC Gene: CE2529: Clp protease |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -176 score = 5.47203 sequence = GTTCGCTACAGGCGTAC Gene: cg2963: Clp protease |
*
Corynebacterium jeikeium K411 Site: position = -209 score = 5.94211 sequence = GTTCGCTGACGGCGTAC Gene: jk0299: Clp protease |
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -274 score = 5.71024 sequence = GTTCGCTCCCGGCGTAC Gene: ckrop_0337: Clp protease |
*
Corynebacterium urealyticum DSM 7109 Site: position = -202 score = 5.35444 sequence = GTTCGCTAGGGGCGTAC Gene: cur_1684: Clp protease |
Clp protease |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |