Regulog VanR - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | PadR |
| Regulation mode: | repressor |
| Biological process: | Vanillate utilization |
| Effector: | Vanillate; Ferulic acid |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By TF family - PadR
- By effector - Vanillate
- By effector - Ferulic acid
- By pathway - Vanillate utilization
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | ||
| Corynebacterium aurimucosum ATCC 700975 | ||
| Corynebacterium diphtheriae NCTC 13129 | ||
| Corynebacterium efficiens YS-314 | 4 | 2 |
| Corynebacterium glutamicum ATCC 13032 | 4 | 2 |
| Corynebacterium jeikeium K411 | ||
| Corynebacterium kroppenstedtii DSM 44385 | ||
| Corynebacterium urealyticum DSM 7109 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| vanR |
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Corynebacterium efficiens YS-314 Site: position = -181 score = 5.73494 sequence = TAAACTCATAGATAGTTGG Gene: CE0633: Vanillate utilization transcriptional regulator VanR, PadR family |
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Corynebacterium glutamicum ATCC 13032 Site: position = -149 score = 6.10027 sequence = TAAACTCTTAGTTAGTTTA Gene: cg2615: Vanillate utilization transcriptional regulator VanR, PadR family |
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Vanillate utilization transcriptional regulator VanR, PadR family |
| CRON 2. | |||||||||
| vanA |
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Corynebacterium efficiens YS-314 Site: position = 83 score = 5.73494 sequence = CCAACTATCTATGAGTTTA Gene: CE0634: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Corynebacterium glutamicum ATCC 13032 Site: position = -53 score = 6.10027 sequence = TAAACTAACTAAGAGTTTA Gene: cg2616: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
| vanB |
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Gene: CE0635: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Gene: cg2617: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
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Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
| vanK |
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Gene: CE0636: Vannilate permease |
Gene: cg2618: Vannilate permease |
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Vannilate permease |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |