Regulog VanR - Corynebacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	PadR
Regulation mode:	repressor
Biological process:	Vanillate utilization
Effector:	Vanillate; Ferulic acid
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Corynebacteriaceae
By TF family - PadR
By effector - Vanillate
By effector - Ferulic acid
By pathway - Vanillate utilization

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314	4	2
Corynebacterium glutamicum ATCC 13032	4	2
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
vanR	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -181 score = 5.73494 sequence = TAAACTCATAGATAGTTGG Gene: CE0633: Vanillate utilization transcriptional regulator VanR, PadR family	* Corynebacterium glutamicum ATCC 13032 Site: position = -149 score = 6.10027 sequence = TAAACTCTTAGTTAGTTTA Gene: cg2615: Vanillate utilization transcriptional regulator VanR, PadR family	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Vanillate utilization transcriptional regulator VanR, PadR family

CRON 2.
vanA	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = 83 score = 5.73494 sequence = CCAACTATCTATGAGTTTA Gene: CE0634: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)	* Corynebacterium glutamicum ATCC 13032 Site: position = -53 score = 6.10027 sequence = TAAACTAACTAAGAGTTTA Gene: cg2616: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
vanB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE0635: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)	Corynebacterium glutamicum ATCC 13032 Gene: cg2617: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
vanK	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE0636: Vannilate permease	Corynebacterium glutamicum ATCC 13032 Gene: cg2618: Vannilate permease	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Vannilate permease

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog VanR - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --