Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog BioQ - Corynebacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Corynebacterium amycolatum SK46 6 3
Corynebacterium aurimucosum ATCC 700975 4 2
Corynebacterium diphtheriae NCTC 13129 7 4
Corynebacterium efficiens YS-314 7 3
Corynebacterium glutamicum ATCC 13032 7 3
Corynebacterium jeikeium K411 5 2
Corynebacterium kroppenstedtii DSM 44385 4 2
Corynebacterium urealyticum DSM 7109
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioB
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_1066: Biotin synthase (EC 2.8.1.6)
*
Corynebacterium aurimucosum ATCC 700975

Site:
position = -30
score = 5.9757
sequence = CTTGAACGGTGTTCAAG

Gene: cauri_0069: Biotin synthase (EC 2.8.1.6)
*2
Corynebacterium diphtheriae NCTC 13129

Site:
position = -24
score = 5.37845
sequence = ATTGAAAGGTGTTCAAT

Gene: DIP1124: Biotin synthase (EC 2.8.1.6)

Site:
position = -15
score = 5.56358
sequence = ATTAAACACCGTTCAAT

Gene: DIP0105: Biotin synthase (EC 2.8.1.6)
*
Corynebacterium efficiens YS-314

Site:
position = -38
score = 6.06981
sequence = ATTGAACACTGTTCAAT

Gene: CE0089: Biotin synthase (EC 2.8.1.6)
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -156
score = 5.09707
sequence = TTTGAACAGTGTTCAAA

Site:
position = -135
score = 6.06981
sequence = CTTGAACACTGTTCAAG

Gene: cg0095: Biotin synthase (EC 2.8.1.6)
*
Corynebacterium jeikeium K411

Site:
position = -76
score = 5.44655
sequence = ACTAAACAGCGTTCAAG

Gene: jk0682: Biotin synthase (EC 2.8.1.6)
*
Corynebacterium kroppenstedtii DSM 44385

Site:
position = -87
score = 5.95277
sequence = ATTGAACAGTGTTCAGG

Gene: ckrop_0784: Biotin synthase (EC 2.8.1.6)
 
Corynebacterium urealyticum DSM 7109

Gene: cur_0456: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
cg0096
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_1065: conserved hypothetical protein
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_0070: conserved hypothetical protein
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP0106: conserved hypothetical protein
 
Corynebacterium efficiens YS-314

Gene: CE0090: conserved hypothetical protein
 
Corynebacterium glutamicum ATCC 13032

Gene: cg0096: conserved hypothetical protein
 
Corynebacterium jeikeium K411

Gene: jk0681: conserved hypothetical protein
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_0785: conserved hypothetical protein
 
Corynebacterium urealyticum DSM 7109

Gene: cur_0457: conserved hypothetical protein
conserved hypothetical protein
 
CRON 2.
bioY
*
Corynebacterium amycolatum SK46

Site:
position = -30
score = 5.04629
sequence = CCTGAACAGTGCTCAAC

Gene: CORAM0001_0836: Substrate-specific component BioY of biotin ECF transporter
*
Corynebacterium aurimucosum ATCC 700975

Site:
position = 3
score = 5.58344
sequence = CTTGAACAGTGTTCAAA

Gene: cauri_1503: Substrate-specific component BioY of biotin ECF transporter
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP1452: Substrate-specific component BioY of biotin ECF transporter
*
Corynebacterium efficiens YS-314

Site:
position = 2
score = 5.55339
sequence = GTTGAACGGTGTTCAGT

Site:
position = -30
score = 4.59085
sequence = GTTTAACACCGTTCAAA

Gene: CE1851: Substrate-specific component BioY of biotin ECF transporter
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -63
score = 4.95494
sequence = CATGAACGCTGTTCAAA

Site:
position = -31
score = 5.64749
sequence = GTTGAACACTGTTCAGG

Gene: cg2147: Substrate-specific component BioY of biotin ECF transporter
*
Corynebacterium jeikeium K411

Site:
position = -39
score = 6.06981
sequence = ATTGAACAGTGTTCAAG

Gene: jk1118: Substrate-specific component BioY of biotin ECF transporter
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_1114: Substrate-specific component BioY of biotin ECF transporter
 
Corynebacterium urealyticum DSM 7109

Gene: cur_0872: Substrate-specific component BioY of biotin ECF transporter
Substrate-specific component BioY of biotin ECF transporter
bioM
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_0835: ATPase component BioM of energizing module of biotin ECF transporter
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_1504: ATPase component BioM of energizing module of biotin ECF transporter
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP1453: ATPase component BioM of energizing module of biotin ECF transporter
 
Corynebacterium efficiens YS-314

Gene: CE1852: ATPase component BioM of energizing module of biotin ECF transporter
 
Corynebacterium glutamicum ATCC 13032

Gene: cg2148: ATPase component BioM of energizing module of biotin ECF transporter
 
Corynebacterium jeikeium K411

Gene: jk1119: ATPase component BioM of energizing module of biotin ECF transporter
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_1115: ATPase component BioM of energizing module of biotin ECF transporter
 
Corynebacterium urealyticum DSM 7109

Gene: cur_0871: ATPase component BioM of energizing module of biotin ECF transporter
ATPase component BioM of energizing module of biotin ECF transporter
bioN
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_0834: Transmembrane component BioN of energizing module of biotin ECF transporter
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_1505: Transmembrane component BioN of energizing module of biotin ECF transporter
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP1454: Transmembrane component BioN of energizing module of biotin ECF transporter
 
Corynebacterium efficiens YS-314

Gene: CE1853: Transmembrane component BioN of energizing module of biotin ECF transporter
 
Corynebacterium glutamicum ATCC 13032

Gene: cg2149: Transmembrane component BioN of energizing module of biotin ECF transporter
 
Corynebacterium jeikeium K411

Gene: jk1120: Transmembrane component BioN of energizing module of biotin ECF transporter
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_1116: Transmembrane component BioN of energizing module of biotin ECF transporter
 
Corynebacterium urealyticum DSM 7109

Gene: cur_0870: Transmembrane component BioN of energizing module of biotin ECF transporter
Transmembrane component BioN of energizing module of biotin ECF transporter
 
CRON 3.
bioA
*
Corynebacterium amycolatum SK46

Site:
position = -50
score = 4.66919
sequence = CCCGAACGTCGTTCAAG

Gene: CORAM0001_1898: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Corynebacterium aurimucosum ATCC 700975
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -103
score = 5.9757
sequence = ATTGAACGCTGTTCAAT

Site:
position = -26
score = 5.56358
sequence = ATTAAACGGTGTTCAAT

Gene: DIP1191: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Corynebacterium efficiens YS-314

Site:
position = -303
score = 5.67042
sequence = GTTGAACGGTGTTCAAT

Site:
position = -224
score = 6.06981
sequence = ATTGAACACTGTTCAAT

Gene: CE1421: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -65
score = 6.06981
sequence = ATTGAACACTGTTCAAT

Gene: cg2885: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Corynebacterium jeikeium K411
*
Corynebacterium kroppenstedtii DSM 44385

Site:
position = -29
score = 5.83573
sequence = ACTGAACACTGTTCAGT

Gene: ckrop_0861: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Corynebacterium urealyticum DSM 7109
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
bioD
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_1897: Dethiobiotin synthetase (EC 6.3.3.3)
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP1192: Dethiobiotin synthetase (EC 6.3.3.3)
 
Corynebacterium efficiens YS-314

Gene: CE1420: Dethiobiotin synthetase (EC 6.3.3.3)
 
Corynebacterium glutamicum ATCC 13032

Gene: cg2886: Dethiobiotin synthetase (EC 6.3.3.3)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_0862: Dethiobiotin synthetase (EC 6.3.3.3)
 
Corynebacterium urealyticum DSM 7109
Dethiobiotin synthetase (EC 6.3.3.3)
 
CRON 4.
bioW
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -20
score = 5.3524
sequence = ATTGAACACTGTTTAAC

Gene: DIP1381: Pimeloyl-CoA synthase (EC 6.2.1.14)
 
Corynebacterium efficiens YS-314
 
Corynebacterium glutamicum ATCC 13032
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Pimeloyl-CoA synthase (EC 6.2.1.14)
bioWF
*
Corynebacterium amycolatum SK46

Site:
position = -47
score = 5.4766
sequence = CTTGAACAGTGTTAAAG

Gene: CORAM0001_0217: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) / Pimeloyl-CoA synthase (EC 6.2.1.14)
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP1382: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Corynebacterium efficiens YS-314
 
Corynebacterium glutamicum ATCC 13032
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_1506: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) / Pimeloyl-CoA synthase (EC 6.2.1.14)
 
Corynebacterium urealyticum DSM 7109
8-amino-7-oxononanoate synthase (EC 2.3.1.47) / Pimeloyl-CoA synthase (EC 6.2.1.14)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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