Regulog BioQ - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By trascription factor - BioQ
- By TF family - TetR
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | 6 | 3 |
| Corynebacterium aurimucosum ATCC 700975 | 4 | 2 |
| Corynebacterium diphtheriae NCTC 13129 | 7 | 4 |
| Corynebacterium efficiens YS-314 | 7 | 3 |
| Corynebacterium glutamicum ATCC 13032 | 7 | 3 |
| Corynebacterium jeikeium K411 | 5 | 2 |
| Corynebacterium kroppenstedtii DSM 44385 | 4 | 2 |
| Corynebacterium urealyticum DSM 7109 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| bioB |
Gene: CORAM0001_1066: Biotin synthase (EC 2.8.1.6) |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -30 score = 5.9757 sequence = CTTGAACGGTGTTCAAG Gene: cauri_0069: Biotin synthase (EC 2.8.1.6) |
*2
Corynebacterium diphtheriae NCTC 13129 Site: position = -24 score = 5.37845 sequence = ATTGAAAGGTGTTCAAT Gene: DIP1124: Biotin synthase (EC 2.8.1.6) Site: position = -15 score = 5.56358 sequence = ATTAAACACCGTTCAAT Gene: DIP0105: Biotin synthase (EC 2.8.1.6) |
*
Corynebacterium efficiens YS-314 Site: position = -38 score = 6.06981 sequence = ATTGAACACTGTTCAAT Gene: CE0089: Biotin synthase (EC 2.8.1.6) |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -156 score = 5.09707 sequence = TTTGAACAGTGTTCAAA Site: position = -135 score = 6.06981 sequence = CTTGAACACTGTTCAAG Gene: cg0095: Biotin synthase (EC 2.8.1.6) |
*
Corynebacterium jeikeium K411 Site: position = -76 score = 5.44655 sequence = ACTAAACAGCGTTCAAG Gene: jk0682: Biotin synthase (EC 2.8.1.6) |
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -87 score = 5.95277 sequence = ATTGAACAGTGTTCAGG Gene: ckrop_0784: Biotin synthase (EC 2.8.1.6) |
Gene: cur_0456: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| cg0096 |
Gene: CORAM0001_1065: conserved hypothetical protein |
Gene: cauri_0070: conserved hypothetical protein |
Gene: DIP0106: conserved hypothetical protein |
Gene: CE0090: conserved hypothetical protein |
Gene: cg0096: conserved hypothetical protein |
Gene: jk0681: conserved hypothetical protein |
Gene: ckrop_0785: conserved hypothetical protein |
Gene: cur_0457: conserved hypothetical protein |
conserved hypothetical protein |
| CRON 2. | |||||||||
| bioY |
*
Corynebacterium amycolatum SK46 Site: position = -30 score = 5.04629 sequence = CCTGAACAGTGCTCAAC Gene: CORAM0001_0836: Substrate-specific component BioY of biotin ECF transporter |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = 3 score = 5.58344 sequence = CTTGAACAGTGTTCAAA Gene: cauri_1503: Substrate-specific component BioY of biotin ECF transporter |
Gene: DIP1452: Substrate-specific component BioY of biotin ECF transporter |
*
Corynebacterium efficiens YS-314 Site: position = 2 score = 5.55339 sequence = GTTGAACGGTGTTCAGT Site: position = -30 score = 4.59085 sequence = GTTTAACACCGTTCAAA Gene: CE1851: Substrate-specific component BioY of biotin ECF transporter |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -63 score = 4.95494 sequence = CATGAACGCTGTTCAAA Site: position = -31 score = 5.64749 sequence = GTTGAACACTGTTCAGG Gene: cg2147: Substrate-specific component BioY of biotin ECF transporter |
*
Corynebacterium jeikeium K411 Site: position = -39 score = 6.06981 sequence = ATTGAACAGTGTTCAAG Gene: jk1118: Substrate-specific component BioY of biotin ECF transporter |
Gene: ckrop_1114: Substrate-specific component BioY of biotin ECF transporter |
Gene: cur_0872: Substrate-specific component BioY of biotin ECF transporter |
Substrate-specific component BioY of biotin ECF transporter |
| bioM |
Gene: CORAM0001_0835: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: cauri_1504: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: DIP1453: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: CE1852: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: cg2148: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: jk1119: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: ckrop_1115: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: cur_0871: ATPase component BioM of energizing module of biotin ECF transporter |
ATPase component BioM of energizing module of biotin ECF transporter |
| bioN |
Gene: CORAM0001_0834: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: cauri_1505: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: DIP1454: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: CE1853: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: cg2149: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: jk1120: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: ckrop_1116: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: cur_0870: Transmembrane component BioN of energizing module of biotin ECF transporter |
Transmembrane component BioN of energizing module of biotin ECF transporter |
| CRON 3. | |||||||||
| bioA |
*
Corynebacterium amycolatum SK46 Site: position = -50 score = 4.66919 sequence = CCCGAACGTCGTTCAAG Gene: CORAM0001_1898: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
|
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -103 score = 5.9757 sequence = ATTGAACGCTGTTCAAT Site: position = -26 score = 5.56358 sequence = ATTAAACGGTGTTCAAT Gene: DIP1191: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Corynebacterium efficiens YS-314 Site: position = -303 score = 5.67042 sequence = GTTGAACGGTGTTCAAT Site: position = -224 score = 6.06981 sequence = ATTGAACACTGTTCAAT Gene: CE1421: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -65 score = 6.06981 sequence = ATTGAACACTGTTCAAT Gene: cg2885: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
|
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -29 score = 5.83573 sequence = ACTGAACACTGTTCAGT Gene: ckrop_0861: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
|
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| bioD |
Gene: CORAM0001_1897: Dethiobiotin synthetase (EC 6.3.3.3) |
|
Gene: DIP1192: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: CE1420: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: cg2886: Dethiobiotin synthetase (EC 6.3.3.3) |
|
Gene: ckrop_0862: Dethiobiotin synthetase (EC 6.3.3.3) |
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Dethiobiotin synthetase (EC 6.3.3.3) |
| CRON 4. | |||||||||
| bioW |
|
|
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -20 score = 5.3524 sequence = ATTGAACACTGTTTAAC Gene: DIP1381: Pimeloyl-CoA synthase (EC 6.2.1.14) |
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Pimeloyl-CoA synthase (EC 6.2.1.14) |
| bioWF |
*
Corynebacterium amycolatum SK46 Site: position = -47 score = 5.4766 sequence = CTTGAACAGTGTTAAAG Gene: CORAM0001_0217: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) / Pimeloyl-CoA synthase (EC 6.2.1.14) |
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Gene: DIP1382: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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|
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Gene: ckrop_1506: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) / Pimeloyl-CoA synthase (EC 6.2.1.14) |
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8-amino-7-oxononanoate synthase (EC 2.3.1.47) / Pimeloyl-CoA synthase (EC 6.2.1.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |