Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of AmtR regulog to Corynebacterium glutamicum ATCC 13032

Reference regulog properties
Source regulog: AmtR - Corynebacteriaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Nitrogen metabolism
Effector: GlnK-AMP, signal transduction protein
Phylum: Actinobacteria
Propagated regulon:
Target genome Corynebacterium glutamicum ATCC 13032
Orthologous TF(s) cg0986
Regulated genes 14
Built upon 42 sites [see more]
Predicted regulatory interactions in Corynebacterium glutamicum ATCC 13032
Locus tag Position Score Sequence
Position: -79
Score: 5.7
Sequence: CATTTCTATCAATCTATAGAAAGT
Position: -33
Score: 6
Sequence: AGTTTCTATAGATTGATAGAAAAG
Locus tag: cg0103
cg0103 -79 5.7 CATTTCTATCAATCTATAGAAAGT
-33 6 AGTTTCTATAGATTGATAGAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: crnT
Ortholog function: Creatinine transporter
Corynebacterium efficiens YS-314 CE2850 -72 5.3 TAATTCTATAGATCAATAGAATTA
-27 5.7 AGTTTCTATCACTCAATAGAAAAG
Corynebacterium glutamicum ATCC 13032 cg0103 -79 5.7 CATTTCTATCAATCTATAGAAAGT
-33 6 AGTTTCTATAGATTGATAGAAAAG
Position: -60
Score: 4.9
Sequence: AATACCTGTCAAGCAATAGAATAG
Locus tag: cg0104
cg0104 -60 4.9 AATACCTGTCAAGCAATAGAATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: codA
Ortholog function: Cytosine deaminase (EC 3.5.4.1)
Corynebacterium glutamicum ATCC 13032 cg0104 -60 4.9 AATACCTGTCAAGCAATAGAATAG
Position: -31
Score: 4.8
Sequence: AATTTCTGTTACCTGACAGAAAGG
Locus tag: cg0113
cg0113 -31 4.8 AATTTCTGTTACCTGACAGAAAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ureA
Ortholog function: Urease, gamma subunit (EC 3.5.1.5)
Corynebacterium efficiens YS-314 CE0993 -25 4.7 TCTAACTATTGACTTATAGTTATT
Corynebacterium glutamicum ATCC 13032 cg0113 -31 4.8 AATTTCTGTTACCTGACAGAAAGG
Position: -110
Score: 5.5
Sequence: ACTTTCGATCAACCTATAGGAAAA
Locus tag: cg0228
cg0228 -110 5.5 ACTTTCGATCAACCTATAGGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hkm
Ortholog function: Predicted sensor histidine kinase of two-component system
Corynebacterium efficiens YS-314 CE0157 -113 5.1 GGTTTCTATTAATCATTCGATAAT
-46 5.7 ATTTTCGATCAACCTATAGGAAAA
Corynebacterium glutamicum ATCC 13032 cg0228 -179 5.4 TGTTTCTATCAATCGTTCGATAAT
-110 5.5 ACTTTCGATCAACCTATAGGAAAA
Position: -46
Score: 5.5
Sequence: ATTATCGAACGATTGATAGAAACA
Locus tag: cg0229
cg0229 -46 5.5 ATTATCGAACGATTGATAGAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Corynebacterium efficiens YS-314 CE0158 -107 5.4 TTTTCCTATAGGTTGATCGAAAAT
-40 5.1 ATTATCGAATGATTAATAGAAACC
Corynebacterium glutamicum ATCC 13032 cg0229 -115 5.3 TTTTCCTATAGGTTGATCGAAAGT
-46 5.5 ATTATCGAACGATTGATAGAAACA
Position: -42
Score: 5.5
Sequence: AAAAACTATAGAGCTATAGAAACT
Locus tag: cg1061
cg1061 -42 5.5 AAAAACTATAGAGCTATAGAAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Corynebacterium efficiens YS-314 CE1000 -65 5.6 ATTACCTATAGCTTTATAGAAACA
-39 5.1 TAAACCTGTCGATCTATAGAAATC
Corynebacterium glutamicum ATCC 13032 cg1061 -68 5.1 ACTACCTATAGGCTGACAGAAACT
-42 5.5 AAAAACTATAGAGCTATAGAAACT
Position: -40
Score: 6.2
Sequence: AGTATCTATAGATTGATAGAAAAT
Locus tag: cg1295
cg1295 -40 6.2 AGTATCTATAGATTGATAGAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cg1295
Ortholog function: Predicted hydrolase/acyltransferase
Corynebacterium glutamicum ATCC 13032 cg1295 -40 6.2 AGTATCTATAGATTGATAGAAAAT
Position: -41
Score: 6
Sequence: ATTTTCTATCAATCTATAGATACT
Locus tag: cg1296
cg1296 -41 6 ATTTTCTATCAATCTATAGATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cg1296
Ortholog function: Predicted non-ribosomal peptide synthetase
Corynebacterium glutamicum ATCC 13032 cg1296 -41 6 ATTTTCTATCAATCTATAGATACT
Position: -100
Score: 5.2
Sequence: GAAATCTATAGAACGATAGGTAAA
Position: -64
Score: 5.3
Sequence: TTTATCTATAGCGGAATAGAAAAT
Locus tag: cg1785
cg1785 -100 5.2 GAAATCTATAGAACGATAGGTAAA
-64 5.3 TTTATCTATAGCGGAATAGAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtA
Ortholog function: Ammonium transporter
Corynebacterium efficiens YS-314 CE1701 -99 5.3 TTAAACTATTGACCGATAGAAACA
-65 5.1 GTTATCTGTTATGCAATAGAAAAT
Corynebacterium glutamicum ATCC 13032 cg1785 -100 5.2 GAAATCTATAGAACGATAGGTAAA
-64 5.3 TTTATCTATAGCGGAATAGAAAAT
Position: -193
Score: 5.2
Sequence: AATATCTATCATGTGATAGGTAAA
Locus tag: cg2136
cg2136 -193 5.2 AATATCTATCATGTGATAGGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gluA
Ortholog function: Glutamate ABC transporter, ATP-binding protein
Corynebacterium efficiens YS-314 CE1844 -110 4.9 TTTACCTATTGAGCTATTGATAAA
Corynebacterium glutamicum ATCC 13032 cg2136 -193 5.2 AATATCTATCATGTGATAGGTAAA
Position: -218
Score: 5.7
Sequence: AATTTCTATCAAACTATAGAAAGA
Locus tag: cg2181
cg2181 -218 5.7 AATTTCTATCAAACTATAGAAAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cg2181
Ortholog function: Predicted ABC transporter, substrate-binding protein
Corynebacterium glutamicum ATCC 13032 cg2181 -218 5.7 AATTTCTATCAAACTATAGAAAGA
Position: -183
Score: 5.4
Sequence: ATTACCTGTTAAACTATAGAAAAT
Locus tag: cg2261
cg2261 -183 5.4 ATTACCTGTTAAACTATAGAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB
Ortholog function: Ammonium transporter
Corynebacterium efficiens YS-314 CE1968 -168 5.3 GAATTCTATCGACCTATCGAAAGT
Corynebacterium glutamicum ATCC 13032 cg2261 -183 5.4 ATTACCTGTTAAACTATAGAAAAT
-140 5 CTATTCTATAGATCTATTGAAATT
Position: -149
Score: 5.2
Sequence: AGTTTTGATAGATCGACAGGTAAT
Locus tag: cg2429
cg2429 -149 5.2 AGTTTTGATAGATCGACAGGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Corynebacterium diphtheriae NCTC 13129 DIP1644 -117 5.4 TTTTTTGATAGCTCTATAGATAAT
Corynebacterium efficiens YS-314 CE2104 -147 5.5 AGTTTTGATAGATCGACAGATAAT
Corynebacterium glutamicum ATCC 13032 cg2429 -149 5.2 AGTTTTGATAGATCGACAGGTAAT
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