Propagation of AmtR regulog to Corynebacterium efficiens YS-314
| Source regulog: | AmtR - Corynebacteriaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Nitrogen metabolism |
| Effector: | GlnK-AMP, signal transduction protein |
| Phylum: | Actinobacteria |
| Propagated regulon: | |
| Target genome | Corynebacterium efficiens YS-314 |
| Orthologous TF(s) | CE0939 |
| Regulated genes | 11 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -46
Score: 5.7 Sequence: ATTTTCGATCAACCTATAGGAAAA
Locus tag: CE0157
|
||||
| CE0157 | -46 | 5.7 | ATTTTCGATCAACCTATAGGAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hkm | ||||
| Ortholog function: Predicted sensor histidine kinase of two-component system | ||||
| Corynebacterium efficiens YS-314 | CE0157 | -113 | 5.1 | GGTTTCTATTAATCATTCGATAAT |
| -46 | 5.7 | ATTTTCGATCAACCTATAGGAAAA | ||
| Corynebacterium glutamicum ATCC 13032 | cg0228 | -179 | 5.4 | TGTTTCTATCAATCGTTCGATAAT |
| -110 | 5.5 | ACTTTCGATCAACCTATAGGAAAA | ||
|
Position: -107
Score: 5.4 Sequence: TTTTCCTATAGGTTGATCGAAAAT
Locus tag: CE0158
|
||||
| CE0158 | -107 | 5.4 | TTTTCCTATAGGTTGATCGAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | ||||
| Corynebacterium efficiens YS-314 | CE0158 | -107 | 5.4 | TTTTCCTATAGGTTGATCGAAAAT |
| -40 | 5.1 | ATTATCGAATGATTAATAGAAACC | ||
| Corynebacterium glutamicum ATCC 13032 | cg0229 | -115 | 5.3 | TTTTCCTATAGGTTGATCGAAAGT |
| -46 | 5.5 | ATTATCGAACGATTGATAGAAACA | ||
|
Position: -117
Score: 5.9 Sequence: ATTACCTATCGATCGATAGATAAA
Locus tag: CE0711
|
||||
| CE0711 | -117 | 5.9 | ATTACCTATCGATCGATAGATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uctT | ||||
| Ortholog function: Urea carboxylase-related transporter, Amino acid permease family | ||||
| Corynebacterium efficiens YS-314 | CE0711 | -117 | 5.9 | ATTACCTATCGATCGATAGATAAA |
|
Position: -102
Score: 5.6 Sequence: ATTATCGGTCGATCTATAGATAAA
Locus tag: CE0715
|
||||
| CE0715 | -102 | 5.6 | ATTATCGGTCGATCTATAGATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amt1 | ||||
| Ortholog function: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) | ||||
| Corynebacterium efficiens YS-314 | CE0715 | -102 | 5.6 | ATTATCGGTCGATCTATAGATAAA |
|
Position: -25
Score: 4.7 Sequence: TCTAACTATTGACTTATAGTTATT
Locus tag: CE0993
|
||||
| CE0993 | -25 | 4.7 | TCTAACTATTGACTTATAGTTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ureA | ||||
| Ortholog function: Urease, gamma subunit (EC 3.5.1.5) | ||||
| Corynebacterium efficiens YS-314 | CE0993 | -25 | 4.7 | TCTAACTATTGACTTATAGTTATT |
| Corynebacterium glutamicum ATCC 13032 | cg0113 | -31 | 4.8 | AATTTCTGTTACCTGACAGAAAGG |
|
Position: -65
Score: 5.6 Sequence: ATTACCTATAGCTTTATAGAAACA
Locus tag: CE1000
|
||||
| CE1000 | -65 | 5.6 | ATTACCTATAGCTTTATAGAAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: urtA | ||||
| Ortholog function: Urea ABC transporter, substrate-binding protein | ||||
| Corynebacterium efficiens YS-314 | CE1000 | -65 | 5.6 | ATTACCTATAGCTTTATAGAAACA |
| -39 | 5.1 | TAAACCTGTCGATCTATAGAAATC | ||
| Corynebacterium glutamicum ATCC 13032 | cg1061 | -68 | 5.1 | ACTACCTATAGGCTGACAGAAACT |
| -42 | 5.5 | AAAAACTATAGAGCTATAGAAACT | ||
|
Position: -99
Score: 5.3 Sequence: TTAAACTATTGACCGATAGAAACA
Locus tag: CE1701
|
||||
| CE1701 | -99 | 5.3 | TTAAACTATTGACCGATAGAAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amtA | ||||
| Ortholog function: Ammonium transporter | ||||
| Corynebacterium efficiens YS-314 | CE1701 | -99 | 5.3 | TTAAACTATTGACCGATAGAAACA |
| -65 | 5.1 | GTTATCTGTTATGCAATAGAAAAT | ||
| Corynebacterium glutamicum ATCC 13032 | cg1785 | -100 | 5.2 | GAAATCTATAGAACGATAGGTAAA |
| -64 | 5.3 | TTTATCTATAGCGGAATAGAAAAT | ||
|
Position: -168
Score: 5.3 Sequence: GAATTCTATCGACCTATCGAAAGT
Locus tag: CE1968
|
||||
| CE1968 | -168 | 5.3 | GAATTCTATCGACCTATCGAAAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amtB | ||||
| Ortholog function: Ammonium transporter | ||||
| Corynebacterium efficiens YS-314 | CE1968 | -168 | 5.3 | GAATTCTATCGACCTATCGAAAGT |
| Corynebacterium glutamicum ATCC 13032 | cg2261 | -183 | 5.4 | ATTACCTGTTAAACTATAGAAAAT |
| -140 | 5 | CTATTCTATAGATCTATTGAAATT | ||
|
Position: -47
Score: 4.6 Sequence: TAAAACTATTAACCGTTAGGTATA
Locus tag: CE1982
|
||||
| CE1982 | -47 | 4.6 | TAAAACTATTAACCGTTAGGTATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gdh | ||||
| Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) | ||||
| Corynebacterium aurimucosum ATCC 700975 | cauri_1607 | -86 | 5.1 | AATTTAGGTCGATTGATAGAAAAC |
| Corynebacterium diphtheriae NCTC 13129 | DIP1547 | -156 | 5.3 | ACTTTCGATAGTTCAATAGGAATT |
| Corynebacterium efficiens YS-314 | CE1982 | -47 | 4.6 | TAAAACTATTAACCGTTAGGTATA |
| Corynebacterium glutamicum ATCC 13032 | cg2280 | -367 | 4.9 | AAAATTGATAAACCTAAAGAAATT |
| -209 | 4 | TAAAACTATTAACCGTTAGTATGA | ||
|
Position: -147
Score: 5.5 Sequence: AGTTTTGATAGATCGACAGATAAT
Locus tag: CE2104
|
||||
| CE2104 | -147 | 5.5 | AGTTTTGATAGATCGACAGATAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: Glutamine synthetase type I (EC 6.3.1.2) | ||||
| Corynebacterium diphtheriae NCTC 13129 | DIP1644 | -117 | 5.4 | TTTTTTGATAGCTCTATAGATAAT |
| Corynebacterium efficiens YS-314 | CE2104 | -147 | 5.5 | AGTTTTGATAGATCGACAGATAAT |
| Corynebacterium glutamicum ATCC 13032 | cg2429 | -149 | 5.2 | AGTTTTGATAGATCGACAGGTAAT |
|
Position: -27
Score: 5.7 Sequence: AGTTTCTATCACTCAATAGAAAAG
Locus tag: CE2850
|
||||
| CE2850 | -27 | 5.7 | AGTTTCTATCACTCAATAGAAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crnT | ||||
| Ortholog function: Creatinine transporter | ||||
| Corynebacterium efficiens YS-314 | CE2850 | -72 | 5.3 | TAATTCTATAGATCAATAGAATTA |
| -27 | 5.7 | AGTTTCTATCACTCAATAGAAAAG | ||
| Corynebacterium glutamicum ATCC 13032 | cg0103 | -79 | 5.7 | CATTTCTATCAATCTATAGAAAGT |
| -33 | 6 | AGTTTCTATAGATTGATAGAAAAG | ||