Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of AmtR regulog to Corynebacterium efficiens YS-314

Reference regulog properties
Source regulog: AmtR - Corynebacteriaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Nitrogen metabolism
Effector: GlnK-AMP, signal transduction protein
Phylum: Actinobacteria
Propagated regulon:
Target genome Corynebacterium efficiens YS-314
Orthologous TF(s) CE0939
Regulated genes 11
Built upon 42 sites [see more]
Predicted regulatory interactions in Corynebacterium efficiens YS-314
Locus tag Position Score Sequence
Position: -46
Score: 5.7
Sequence: ATTTTCGATCAACCTATAGGAAAA
Locus tag: CE0157
CE0157 -46 5.7 ATTTTCGATCAACCTATAGGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hkm
Ortholog function: Predicted sensor histidine kinase of two-component system
Corynebacterium efficiens YS-314 CE0157 -113 5.1 GGTTTCTATTAATCATTCGATAAT
-46 5.7 ATTTTCGATCAACCTATAGGAAAA
Corynebacterium glutamicum ATCC 13032 cg0228 -179 5.4 TGTTTCTATCAATCGTTCGATAAT
-110 5.5 ACTTTCGATCAACCTATAGGAAAA
Position: -107
Score: 5.4
Sequence: TTTTCCTATAGGTTGATCGAAAAT
Locus tag: CE0158
CE0158 -107 5.4 TTTTCCTATAGGTTGATCGAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Corynebacterium efficiens YS-314 CE0158 -107 5.4 TTTTCCTATAGGTTGATCGAAAAT
-40 5.1 ATTATCGAATGATTAATAGAAACC
Corynebacterium glutamicum ATCC 13032 cg0229 -115 5.3 TTTTCCTATAGGTTGATCGAAAGT
-46 5.5 ATTATCGAACGATTGATAGAAACA
Position: -117
Score: 5.9
Sequence: ATTACCTATCGATCGATAGATAAA
Locus tag: CE0711
CE0711 -117 5.9 ATTACCTATCGATCGATAGATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uctT
Ortholog function: Urea carboxylase-related transporter, Amino acid permease family
Corynebacterium efficiens YS-314 CE0711 -117 5.9 ATTACCTATCGATCGATAGATAAA
Position: -102
Score: 5.6
Sequence: ATTATCGGTCGATCTATAGATAAA
Locus tag: CE0715
CE0715 -102 5.6 ATTATCGGTCGATCTATAGATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Corynebacterium efficiens YS-314 CE0715 -102 5.6 ATTATCGGTCGATCTATAGATAAA
Position: -25
Score: 4.7
Sequence: TCTAACTATTGACTTATAGTTATT
Locus tag: CE0993
CE0993 -25 4.7 TCTAACTATTGACTTATAGTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ureA
Ortholog function: Urease, gamma subunit (EC 3.5.1.5)
Corynebacterium efficiens YS-314 CE0993 -25 4.7 TCTAACTATTGACTTATAGTTATT
Corynebacterium glutamicum ATCC 13032 cg0113 -31 4.8 AATTTCTGTTACCTGACAGAAAGG
Position: -65
Score: 5.6
Sequence: ATTACCTATAGCTTTATAGAAACA
Locus tag: CE1000
CE1000 -65 5.6 ATTACCTATAGCTTTATAGAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Corynebacterium efficiens YS-314 CE1000 -65 5.6 ATTACCTATAGCTTTATAGAAACA
-39 5.1 TAAACCTGTCGATCTATAGAAATC
Corynebacterium glutamicum ATCC 13032 cg1061 -68 5.1 ACTACCTATAGGCTGACAGAAACT
-42 5.5 AAAAACTATAGAGCTATAGAAACT
Position: -99
Score: 5.3
Sequence: TTAAACTATTGACCGATAGAAACA
Locus tag: CE1701
CE1701 -99 5.3 TTAAACTATTGACCGATAGAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtA
Ortholog function: Ammonium transporter
Corynebacterium efficiens YS-314 CE1701 -99 5.3 TTAAACTATTGACCGATAGAAACA
-65 5.1 GTTATCTGTTATGCAATAGAAAAT
Corynebacterium glutamicum ATCC 13032 cg1785 -100 5.2 GAAATCTATAGAACGATAGGTAAA
-64 5.3 TTTATCTATAGCGGAATAGAAAAT
Position: -168
Score: 5.3
Sequence: GAATTCTATCGACCTATCGAAAGT
Locus tag: CE1968
CE1968 -168 5.3 GAATTCTATCGACCTATCGAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB
Ortholog function: Ammonium transporter
Corynebacterium efficiens YS-314 CE1968 -168 5.3 GAATTCTATCGACCTATCGAAAGT
Corynebacterium glutamicum ATCC 13032 cg2261 -183 5.4 ATTACCTGTTAAACTATAGAAAAT
-140 5 CTATTCTATAGATCTATTGAAATT
Position: -47
Score: 4.6
Sequence: TAAAACTATTAACCGTTAGGTATA
Locus tag: CE1982
CE1982 -47 4.6 TAAAACTATTAACCGTTAGGTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdh
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Corynebacterium aurimucosum ATCC 700975 cauri_1607 -86 5.1 AATTTAGGTCGATTGATAGAAAAC
Corynebacterium diphtheriae NCTC 13129 DIP1547 -156 5.3 ACTTTCGATAGTTCAATAGGAATT
Corynebacterium efficiens YS-314 CE1982 -47 4.6 TAAAACTATTAACCGTTAGGTATA
Corynebacterium glutamicum ATCC 13032 cg2280 -367 4.9 AAAATTGATAAACCTAAAGAAATT
-209 4 TAAAACTATTAACCGTTAGTATGA
Position: -147
Score: 5.5
Sequence: AGTTTTGATAGATCGACAGATAAT
Locus tag: CE2104
CE2104 -147 5.5 AGTTTTGATAGATCGACAGATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Corynebacterium diphtheriae NCTC 13129 DIP1644 -117 5.4 TTTTTTGATAGCTCTATAGATAAT
Corynebacterium efficiens YS-314 CE2104 -147 5.5 AGTTTTGATAGATCGACAGATAAT
Corynebacterium glutamicum ATCC 13032 cg2429 -149 5.2 AGTTTTGATAGATCGACAGGTAAT
Position: -27
Score: 5.7
Sequence: AGTTTCTATCACTCAATAGAAAAG
Locus tag: CE2850
CE2850 -27 5.7 AGTTTCTATCACTCAATAGAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: crnT
Ortholog function: Creatinine transporter
Corynebacterium efficiens YS-314 CE2850 -72 5.3 TAATTCTATAGATCAATAGAATTA
-27 5.7 AGTTTCTATCACTCAATAGAAAAG
Corynebacterium glutamicum ATCC 13032 cg0103 -79 5.7 CATTTCTATCAATCTATAGAAAGT
-33 6 AGTTTCTATAGATTGATAGAAAAG
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