Regulog RosR - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | MarR |
| Regulation mode: | repressor |
| Biological process: | Peroxide stress response |
| Effector: | Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By TF family - MarR
- By effector - Hydrogen peroxide
- By effector - Manganese ion, (Mn2+)
- By effector - Iron ion, (Fe2+)
- By pathway - Peroxide stress response
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | 3 | 3 |
| Corynebacterium aurimucosum ATCC 700975 | 6 | 5 |
| Corynebacterium diphtheriae NCTC 13129 | 5 | 4 |
| Corynebacterium efficiens YS-314 | 9 | 8 |
| Corynebacterium glutamicum ATCC 13032 | 17 | 10 |
| Corynebacterium jeikeium K411 | 3 | 3 |
| Corynebacterium kroppenstedtii DSM 44385 | 5 | 4 |
| Corynebacterium urealyticum DSM 7109 | 5 | 4 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| yqjG |
*
Corynebacterium amycolatum SK46 Site: position = 4 score = 5.16877 sequence = TTGGTGGCATGACAACAA Gene: CORAM0001_1019: Glutathione S-transferase domain protein |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -42 score = 5.71942 sequence = TTGTTGACGTATCAAATA Gene: cauri_0351: Glutathione S-transferase domain protein |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = 19 score = 5.54742 sequence = TTGTTGATATGTCCACAC Gene: DIP1093: Glutathione S-transferase domain protein |
*
Corynebacterium efficiens YS-314 Site: position = 37 score = 5.63141 sequence = TTGTTGACATATCACATA Gene: CE1359: Glutathione S-transferase domain protein |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -43 score = 6.02843 sequence = TTGTTGACATATCATCTA Gene: cg1426: Glutathione S-transferase domain protein |
|
|
*
Corynebacterium urealyticum DSM 7109 Site: position = -87 score = 5.44857 sequence = TTGGTGACATATCATCCA Gene: cur_0747: Glutathione S-transferase domain protein |
Glutathione S-transferase domain protein |
| CRON 2. | |||||||||
| ywcH |
|
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -30 score = 5.28865 sequence = TTGTTGACACGTCACAGA Gene: cauri_1400: Predicted monooxygenase |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -66 score = 5.75859 sequence = TTGTTGATATGTCATATA Gene: DIP1436: Predicted monooxygenase |
*
Corynebacterium efficiens YS-314 Site: position = -43 score = 6.10011 sequence = TTGATGATATATCAACAA Gene: CE1758: Predicted monooxygenase |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -42 score = 6.06495 sequence = TTGGTGACATATCAACAA Site: position = -72 score = 4.97344 sequence = TTGTTGACGCATCCATTA Gene: cg1848: Predicted monooxygenase |
|
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -54 score = 5.58436 sequence = TTGTTGATATGTCATGTA Gene: ckrop_1424: Predicted monooxygenase |
*
Corynebacterium urealyticum DSM 7109 Site: position = -39 score = 4.76414 sequence = TAGGTGACATGTCACGTA Gene: cur_1546: Predicted monooxygenase |
Predicted monooxygenase |
| cg1849 |
|
|
|
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Gene: cg1849: Hypothetical protein |
|
|
|
Hypothetical protein |
| msuE |
|
Gene: cauri_1401: FMN reductase (EC 1.5.1.29) |
Gene: DIP1437: FMN reductase (EC 1.5.1.29) |
Gene: CE1759: FMN reductase (EC 1.5.1.29) |
Gene: cg1850: FMN reductase (EC 1.5.1.29) |
|
Gene: ckrop_1423: FMN reductase (EC 1.5.1.29) |
Gene: cur_1545: FMN reductase (EC 1.5.1.29) |
FMN reductase (EC 1.5.1.29) |
| CRON 3. | |||||||||
| cg3084 |
|
|
|
*
Corynebacterium efficiens YS-314 Site: position = -8 score = 5.92845 sequence = TTGTTGACATGACAACAA Gene: CE2614: oxidoreductase |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -8 score = 6.36669 sequence = TTGTTGATATGTCAACAA Gene: cg3084: oxidoreductase |
|
Gene: ckrop_0259: oxidoreductase |
Gene: cur_0259: oxidoreductase |
oxidoreductase |
| cg3085 |
|
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -34 score = 6.05484 sequence = TTGTTGATATGTCACCAA Gene: cauri_0737: putative alkanal monooxygenase alpha chain |
|
Gene: CE2620: putative alkanal monooxygenase alpha chain |
Gene: cg3085: putative alkanal monooxygenase alpha chain |
|
|
|
putative alkanal monooxygenase alpha chain |
| CRON 4. | |||||||||
| cg2329 |
|
|
|
*
Corynebacterium efficiens YS-314 Site: position = -56 score = 5.96874 sequence = TTGTTGATATATCCACAA Gene: CE2021: putative oxidoreductase |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -57 score = 5.89041 sequence = TTGTTGATATATCTACAA Gene: cg2329: putative oxidoreductase |
|
|
|
putative oxidoreductase |
| CRON 5. | |||||||||
| msrA |
Gene: CORAM0001_0128: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
Gene: cauri_2405: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
Gene: DIP2260: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
*
Corynebacterium efficiens YS-314 Site: position = -127 score = 5.2552 sequence = TTGTTGATAAAGCAACGA Gene: CE2764: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -133 score = 5.31275 sequence = TTGTTGATATTGCAACGA Gene: cg3236: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
Gene: jk0110: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
Gene: ckrop_0108: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
Gene: cur_0121: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
| CRON 6. | |||||||||
| sodA |
Gene: CORAM0001_2076: Superoxide dismutase (EC 1.15.1.1) |
Gene: cauri_2406: Superoxide dismutase (EC 1.15.1.1) |
Gene: DIP2261: Superoxide dismutase (EC 1.15.1.1) |
*
Corynebacterium efficiens YS-314 Site: position = -98 score = 5.11203 sequence = TCGTTGCTTTATCAACAA Gene: CE2765: Superoxide dismutase (EC 1.15.1.1) |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -131 score = 5.17431 sequence = TCGTTGCAATATCAACAA Gene: cg3237: Superoxide dismutase (EC 1.15.1.1) |
Gene: jk0112: Superoxide dismutase (EC 1.15.1.1) |
Gene: ckrop_0110: Superoxide dismutase (EC 1.15.1.1) |
Gene: cur_0122: Superoxide dismutase (EC 1.15.1.1) |
Superoxide dismutase (EC 1.15.1.1) |
| CRON 7. | |||||||||
| rosR |
Gene: CORAM0001_0627: Peroxide stress response transcriptional regulator RosR, MarR family |
Gene: cauri_1035: Peroxide stress response transcriptional regulator RosR, MarR family |
Gene: DIP1028: Peroxide stress response transcriptional regulator RosR, MarR family |
*
Corynebacterium efficiens YS-314 Site: position = -170 score = 5.70247 sequence = TTGATGATGCGTCAACAA Gene: CE1273: Peroxide stress response transcriptional regulator RosR, MarR family |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -169 score = 5.86459 sequence = TTGATGATGTGTCAACAA Gene: cg1324: Peroxide stress response transcriptional regulator RosR, MarR family |
*
Corynebacterium jeikeium K411 Site: position = -46 score = 5.64481 sequence = TAGTTGATGTATCAACTA Gene: jk2061: Peroxide stress response transcriptional regulator RosR, MarR family |
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -176 score = 5.33095 sequence = TTTATGATACATCAACTA Gene: ckrop_0692: Peroxide stress response transcriptional regulator RosR, MarR family |
*
Corynebacterium urealyticum DSM 7109 Site: position = -46 score = 5.35485 sequence = TAGGTGATGTGTCAACTA Gene: cur_1983: Peroxide stress response transcriptional regulator RosR, MarR family |
Peroxide stress response transcriptional regulator RosR, MarR family |
| CRON 8. | |||||||||
| cg1322 |
*
Corynebacterium amycolatum SK46 Site: position = -89 score = 5.75978 sequence = TTGTTGACACGTCAACAC Site: position = -118 score = 5.45961 sequence = TTGTTGACACATCACCAC Gene: CORAM0001_1635: Predicted polyisoprenoid-binding protein |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -49 score = 5.688 sequence = TTGTTGTCACGTCAACAA Gene: cauri_2527: Predicted polyisoprenoid-binding protein |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -147 score = 5.10726 sequence = TTGTTGACACGTCAATTG Gene: DIP1027: Predicted polyisoprenoid-binding protein |
*
Corynebacterium efficiens YS-314 Site: position = 9 score = 5.74913 sequence = TTGTTGACGCATCATCAA Gene: CE1272: Predicted polyisoprenoid-binding protein |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -127 score = 5.97296 sequence = TTGTTGACACATCATCAA Gene: cg1322: Predicted polyisoprenoid-binding protein |
*
Corynebacterium jeikeium K411 Site: position = -88 score = 5.70653 sequence = TAGTTGATACATCAACTA Gene: jk2060: Predicted polyisoprenoid-binding protein |
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -64 score = 5.02796 sequence = TAGTTGATGTGTCACATA Gene: ckrop_0391: Predicted polyisoprenoid-binding protein |
*
Corynebacterium urealyticum DSM 7109 Site: position = -27 score = 5.35951 sequence = TAGTTGACACATCACCTA Gene: cur_1982: Predicted polyisoprenoid-binding protein |
Predicted polyisoprenoid-binding protein |
| CRON 9. | |||||||||
| narK |
|
|
Gene: DIP0501: Nitrate/nitrite transporter |
Gene: CE1297: Nitrate/nitrite transporter |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -191 score = 4.26803 sequence = ATGTTGATATAAGCACAA Gene: cg1345: Nitrate/nitrite transporter |
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Nitrate/nitrite transporter |
| narG |
|
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Gene: DIP0500: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) |
Gene: CE1296: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) |
Gene: cg1344: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) |
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Respiratory nitrate reductase alpha chain (EC 1.7.99.4) |
| narH |
|
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Gene: DIP0499: Respiratory nitrate reductase beta chain (EC 1.7.99.4) |
Gene: CE1295: Respiratory nitrate reductase beta chain (EC 1.7.99.4) |
Gene: cg1343: Respiratory nitrate reductase beta chain (EC 1.7.99.4) |
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Respiratory nitrate reductase beta chain (EC 1.7.99.4) |
| narJ |
|
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Gene: DIP0498: Respiratory nitrate reductase delta chain (EC 1.7.99.4) |
Gene: CE1294: Respiratory nitrate reductase delta chain (EC 1.7.99.4) |
Gene: cg1342: Respiratory nitrate reductase delta chain (EC 1.7.99.4) |
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|
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Respiratory nitrate reductase delta chain (EC 1.7.99.4) |
| narI |
|
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Gene: DIP0497: Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
Gene: CE1293: Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
Gene: cg1341: Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
|
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Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
| CRON 10. | |||||||||
| cg1150 |
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|
|
*
Corynebacterium glutamicum ATCC 13032 Site: position = -42 score = 5.47912 sequence = TTGTTGATACATCAACTT Gene: cg1150: Hypothetical protein |
|
|
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Hypothetical protein |
| CRON 11. | |||||||||
| poxB |
*
Corynebacterium amycolatum SK46 Site: position = -38 score = 4.33035 sequence = ATGTTGACGTAGCGACTA Gene: CORAM0001_0264: Pyruvate oxidase (EC 1.2.2.2) |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -116 score = 3.99095 sequence = TTGTTGTTAAAGTCACAA Gene: cauri_2195: Pyruvate oxidase (EC 1.2.2.2) |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -395 score = 3.619 sequence = TTGAGGTCATATCCACGT Gene: DIP1952: Pyruvate oxidase (EC 1.2.2.2) |
|
Gene: cg2891: Pyruvate oxidase (EC 1.2.2.2) |
*
Corynebacterium jeikeium K411 Site: position = -8 score = 3.73869 sequence = TTGGAGGCATGGCTAAAA Gene: jk0715: Pyruvate oxidase (EC 1.2.2.2) |
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -202 score = 5.25002 sequence = TAGTTGATGTATCATAAA Gene: ckrop_0693: Pyruvate oxidase (EC 1.2.2.2) |
|
Pyruvate oxidase (EC 1.2.2.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |