Regulog HspR - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | pepressor |
| Biological process: | Heat shock response |
| Effector: | Heat shock |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By TF family - MerR
- By effector - Heat shock
- By pathway - Heat shock response
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | 5 | 2 |
| Corynebacterium aurimucosum ATCC 700975 | 5 | 2 |
| Corynebacterium diphtheriae NCTC 13129 | 5 | 3 |
| Corynebacterium efficiens YS-314 | 5 | 2 |
| Corynebacterium glutamicum ATCC 13032 | 5 | 2 |
| Corynebacterium jeikeium K411 | 5 | 3 |
| Corynebacterium kroppenstedtii DSM 44385 | 3 | 2 |
| Corynebacterium urealyticum DSM 7109 | 3 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| dnaK |
*
Corynebacterium amycolatum SK46 Site: position = -108 score = 5.97789 sequence = TTGAGTCAGACACACTCAA Gene: CORAM0001_1650: Chaperone protein DnaK |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -56 score = 4.77901 sequence = TTGAGTCGCGCATTATCAA Gene: cauri_2321: Chaperone protein DnaK |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -123 score = 5.98512 sequence = TTGAGTGACACCGGCTCAA Gene: DIP2120: Chaperone protein DnaK |
*
Corynebacterium efficiens YS-314 Site: position = -102 score = 5.29163 sequence = TTGAGTGTGATCCACTCAA Gene: CE2629: Chaperone protein DnaK |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -283 score = 4.77089 sequence = TTGAGTGGGACCTGTTGAA Site: position = -114 score = 5.80542 sequence = TTGAGTCAGGCAGGCTCAA Gene: cg3100: Chaperone protein DnaK |
*
Corynebacterium jeikeium K411 Site: position = -138 score = 5.12289 sequence = TTGAGCGGGTTAAGCTCAA Gene: jk0179: Chaperone protein DnaK |
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -205 score = 5.02147 sequence = TTGAGCGAGTAAGACTCAA Site: position = -139 score = 4.54214 sequence = TTGAGTCTGATTCACTCAG Gene: ckrop_0278: Chaperone protein DnaK |
Gene: cur_1815: Chaperone protein DnaK |
Chaperone protein DnaK |
| grpE |
Gene: CORAM0001_1651: Heat shock protein GrpE |
Gene: cauri_2320: Heat shock protein GrpE |
Gene: DIP2119: Heat shock protein GrpE |
Gene: CE2628: Heat shock protein GrpE |
Gene: cg3099: Heat shock protein GrpE |
Gene: jk0180: Heat shock protein GrpE |
Gene: ckrop_0279: Heat shock protein GrpE |
Gene: cur_1814: Heat shock protein GrpE |
Heat shock protein GrpE |
| dnaJ |
Gene: CORAM0001_1652: Chaperone protein DnaJ |
Gene: cauri_2319: Chaperone protein DnaJ |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -131 score = 4.8857 sequence = TCCAGCAGAAGATGCTCAA Gene: DIP2118: Chaperone protein DnaJ |
Gene: CE2627: Chaperone protein DnaJ |
Gene: cg3098: Chaperone protein DnaJ |
*
Corynebacterium jeikeium K411 Site: position = -70 score = 4.8459 sequence = TTCAGCGCGGTAGACTCAA Gene: jk0183: Chaperone protein DnaJ |
Gene: ckrop_0283: Chaperone protein DnaJ |
*
Corynebacterium urealyticum DSM 7109 Site: position = -116 score = 4.8459 sequence = TTCAGCGCGGTAGACTCAA Gene: cur_1811: Chaperone protein DnaJ |
Chaperone protein DnaJ |
| hspR |
Gene: CORAM0001_1653: Heat shock response transcriptional regulator HspR, MerR family |
Gene: cauri_2318: Heat shock response transcriptional regulator HspR, MerR family |
Gene: DIP2117: Heat shock response transcriptional regulator HspR, MerR family |
Gene: CE2626: Heat shock response transcriptional regulator HspR, MerR family |
Gene: cg3097: Heat shock response transcriptional regulator HspR, MerR family |
Gene: jk0184: Heat shock response transcriptional regulator HspR, MerR family |
Gene: ckrop_0284: Heat shock response transcriptional regulator HspR, MerR family |
Gene: cur_1810: Heat shock response transcriptional regulator HspR, MerR family |
Heat shock response transcriptional regulator HspR, MerR family |
| CRON 2. | |||||||||
| clpB |
*
Corynebacterium amycolatum SK46 Site: position = -74 score = 6.74973 sequence = TTGAGTGGAACAGGCTCAA Site: position = -22 score = 5.06083 sequence = TTGAGTCAAAGGGGCGCAA Gene: CORAM0001_1383: ATP-dependent chaperone ClpB |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -108 score = 6.86659 sequence = TTGAGTGGAACAGACTCAA Gene: cauri_2310: ATP-dependent chaperone ClpB |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -76 score = 6.54882 sequence = TTGAGTGGAACAAACTCAA Gene: DIP2104: ATP-dependent chaperone ClpB |
*
Corynebacterium efficiens YS-314 Site: position = -151 score = 6.72665 sequence = TTGAGTGGAATAGACTCAA Gene: CE2613: ATP-dependent chaperone ClpB |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -132 score = 6.64202 sequence = TTGAGTGGAACATACTCAA Gene: cg3079: ATP-dependent chaperone ClpB |
*
Corynebacterium jeikeium K411 Site: position = -77 score = 5.00333 sequence = TTGAGTCAGGTGTACTCAA Site: position = -107 score = 6.35327 sequence = TTGAGCGGAATAGACTCAA Gene: jk0201: ATP-dependent chaperone ClpB |
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -177 score = 5.04099 sequence = TTGCGTGACGTACACTCAA Site: position = -229 score = 6.72665 sequence = TTGAGTGGAATAGACTCAA Gene: ckrop_0294: ATP-dependent chaperone ClpB |
*
Corynebacterium urealyticum DSM 7109 Site: position = -65 score = 4.78205 sequence = TTGAGTCTAGTGAACTCAA Site: position = -95 score = 6.72665 sequence = TTGAGTGGAATAGACTCAA Gene: cur_1804: ATP-dependent chaperone ClpB |
ATP-dependent chaperone ClpB |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |