Regulog GenR - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | activator (repressor) |
| Biological process: | 3-hydroxybenzoate degradation |
| Effector: | Gentisate; 3-hydroxybenzoate |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By trascription factor - NagR
- By TF family - IclR
- By effector - Gentisate
- By effector - 3-hydroxybenzoate
- By pathway - 3-hydroxybenzoate degradation
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | ||
| Corynebacterium aurimucosum ATCC 700975 | ||
| Corynebacterium diphtheriae NCTC 13129 | ||
| Corynebacterium efficiens YS-314 | 6 | 3 |
| Corynebacterium glutamicum ATCC 13032 | 6 | 3 |
| Corynebacterium jeikeium K411 | ||
| Corynebacterium kroppenstedtii DSM 44385 | ||
| Corynebacterium urealyticum DSM 7109 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| genR |
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Corynebacterium efficiens YS-314 Site: position = -11 score = 5.61768 sequence = GATTCCTCTATGTGGAAAG Gene: CE2861: 3-hydroxybenzoate degradation transcriptional regulator, IclR family |
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Corynebacterium glutamicum ATCC 13032 Site: position = -26 score = 5.39701 sequence = GATTCCGCTATCTGGAAAG Gene: cg3352: 3-hydroxybenzoate degradation transcriptional regulator, IclR family |
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3-hydroxybenzoate degradation transcriptional regulator, IclR family |
| CRON 2. | |||||||||
| genK |
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Corynebacterium efficiens YS-314 Site: position = -57 score = 5.83774 sequence = CTTTCCACATAGAGGAATC Gene: CE2862: Gentisate transporter, MFS family |
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Corynebacterium glutamicum ATCC 13032 Site: position = -90 score = 5.68516 sequence = CTTTCCAGATAGCGGAATC Gene: cg3353: Gentisate transporter, MFS family |
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Gentisate transporter, MFS family |
| genH |
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Gene: CE2863: 3-hydroxybenzoate 6-hydroxylase |
Gene: cg3354: 3-hydroxybenzoate 6-hydroxylase |
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3-hydroxybenzoate 6-hydroxylase |
| CRON 3. | |||||||||
| genD |
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Corynebacterium efficiens YS-314 Site: position = -102 score = 5.74705 sequence = ATTTCCGCATAGCGGAAAC Gene: CE2860: Gentisate 1,2-dioxygenase (EC 1.13.11.4) |
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Corynebacterium glutamicum ATCC 13032 Site: position = -166 score = 6.14157 sequence = GATTCCACATAGCGGAATT Gene: cg3351: Gentisate 1,2-dioxygenase (EC 1.13.11.4) |
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Gentisate 1,2-dioxygenase (EC 1.13.11.4) |
| genF |
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Gene: CE2859: Fumarylpyruvate hydrolase |
Gene: cg3350: Fumarylpyruvate hydrolase |
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Fumarylpyruvate hydrolase |
| genM |
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Gene: CE2858: Maleylpyruvate isomerase, mycothiol-dependent (EC 5.2.1.4) |
Gene: cg3349: Maleylpyruvate isomerase, mycothiol-dependent (EC 5.2.1.4) |
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Maleylpyruvate isomerase, mycothiol-dependent (EC 5.2.1.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |