Regulog QsuR - Corynebacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	activator
Biological process:	Aromatic amino acid metabolism
Effector:	Shikimate; Quinate
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Corynebacteriaceae
By TF family - LysR
By effector - Shikimate
By effector - Quinate
By pathway - Aromatic amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314	5	2
Corynebacterium glutamicum ATCC 13032	5	2
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
qsuA	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -267 score = 6.28926 sequence = TTTGTACTATAGGTCACA Gene: CE0440: Predicted quinate/shikimate transporter	* Corynebacterium glutamicum ATCC 13032 Site: position = -216 score = 6.28926 sequence = TTTGTACTATAGATCACA Gene: cg0501: Predicted quinate/shikimate transporter	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Predicted quinate/shikimate transporter
qsuB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE0441: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	Corynebacterium glutamicum ATCC 13032 Gene: cg0502: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
qsuC	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE0442: 3-dehydroquinate dehydratase II (EC 4.2.1.10)	Corynebacterium glutamicum ATCC 13032 Gene: cg0503: 3-dehydroquinate dehydratase II (EC 4.2.1.10)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	3-dehydroquinate dehydratase II (EC 4.2.1.10)
qsuD	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE0443: Quinate/shikimate 5-dehydrogenase	Corynebacterium glutamicum ATCC 13032 Gene: cg0504: Quinate/shikimate 5-dehydrogenase	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Quinate/shikimate 5-dehydrogenase

CRON 2.
qsuR	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -91 score = 6.28926 sequence = TGTGACCTATAGTACAAA Gene: CE0439: Quinate and shikimate utilization transcriptional regulator QsuR, LysR family	* Corynebacterium glutamicum ATCC 13032 Site: position = -77 score = 6.28926 sequence = TGTGATCTATAGTACAAA Gene: cg0500: Quinate and shikimate utilization transcriptional regulator QsuR, LysR family	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Quinate and shikimate utilization transcriptional regulator QsuR, LysR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog QsuR - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --