Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PcaR regulog to Corynebacterium glutamicum ATCC 13032

Reference regulog properties
Source regulog: PcaR - Corynebacteriaceae
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor
Biological process: Protocatechuate degradation
Effector:
Phylum: Actinobacteria
Propagated regulon:
Target genome Corynebacterium glutamicum ATCC 13032
Orthologous TF(s) cg2624
Regulated genes 4
Built upon 8 sites [see more]
Predicted regulatory interactions in Corynebacterium glutamicum ATCC 13032
Locus tag Position Score Sequence
Position: -119
Score: 5.8
Sequence: GTTCGCAAGGCGAAC
Locus tag: cg1226
cg1226 -119 5.8 GTTCGCAAGGCGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pobA
Ortholog function: Hydroxybenzoate hydroxylase (EC 1.14.13.2)
Corynebacterium efficiens YS-314 CE1133 -186 5.9 GTTCACTCTGCGAAC
Corynebacterium glutamicum ATCC 13032 cg1226 -119 5.8 GTTCGCAAGGCGAAC
Position: -45
Score: 5.9
Sequence: GTTCGCATTGCGAAC
Locus tag: cg2623
cg2623 -45 5.9 GTTCGCATTGCGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pcaI
Ortholog function: 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6)
Corynebacterium efficiens YS-314 CE2293 51 6.1 GTTCGCTCAGCGAAC
Corynebacterium glutamicum ATCC 13032 cg2623 -45 5.9 GTTCGCATTGCGAAC
Position: -34
Score: 6.1
Sequence: GTTCGCAATGCGAAC
Locus tag: cg2624
cg2624 -34 6.1 GTTCGCAATGCGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pcaR
Ortholog function: Protocoatechuate utilization transription regulator PcaR, IclR family
Corynebacterium efficiens YS-314 CE2294 10 5.9 GTTCGCTGAGCGAAC
Corynebacterium glutamicum ATCC 13032 cg2624 -34 6.1 GTTCGCAATGCGAAC
Position: -81
Score: 5.7
Sequence: GTTCGCCCCGCGAAC
Locus tag: cg2631
cg2631 -81 5.7 GTTCGCCCCGCGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pcaH
Ortholog function: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
Corynebacterium efficiens YS-314 CE2301 -82 5.9 GTCCGCTCTGCGAAC
Corynebacterium glutamicum ATCC 13032 cg2631 -81 5.7 GTTCGCCCCGCGAAC
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