Regulog PcaR - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor |
| Biological process: | Protocatechuate degradation |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By TF family - IclR
- By pathway - Protocatechuate degradation
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | ||
| Corynebacterium aurimucosum ATCC 700975 | ||
| Corynebacterium diphtheriae NCTC 13129 | ||
| Corynebacterium efficiens YS-314 | 7 | 4 |
| Corynebacterium glutamicum ATCC 13032 | 12 | 4 |
| Corynebacterium jeikeium K411 | ||
| Corynebacterium kroppenstedtii DSM 44385 | ||
| Corynebacterium urealyticum DSM 7109 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| pcaR |
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Corynebacterium efficiens YS-314 Site: position = 10 score = 5.86487 sequence = GTTCGCTGAGCGAAC Gene: CE2294: Protocoatechuate utilization transription regulator PcaR, IclR family |
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Corynebacterium glutamicum ATCC 13032 Site: position = -34 score = 6.05731 sequence = GTTCGCAATGCGAAC Gene: cg2624: Protocoatechuate utilization transription regulator PcaR, IclR family |
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Protocoatechuate utilization transription regulator PcaR, IclR family |
| pcaF |
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Gene: CE2295: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
Gene: cg2625: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
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Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
| pcaL |
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Gene: CE2296: Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) |
Gene: cg2626: Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) |
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Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) |
| pcaO |
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Gene: CE2297: Protocoatechuate utilization transription regulator PcaO, LuxR family |
Gene: cg2627: Protocoatechuate utilization transription regulator PcaO, LuxR family |
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Protocoatechuate utilization transription regulator PcaO, LuxR family |
| CRON 2. | |||||||||
| pcaI |
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*
Corynebacterium efficiens YS-314 Site: position = 51 score = 6.11352 sequence = GTTCGCTCAGCGAAC Gene: CE2293: 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -45 score = 5.94063 sequence = GTTCGCATTGCGAAC Gene: cg2623: 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) |
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3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) |
| pcaJ |
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Gene: CE2292: 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) |
Gene: cg2622: 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) |
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3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) |
| CRON 3. | |||||||||
| pobA |
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*
Corynebacterium efficiens YS-314 Site: position = -186 score = 5.88328 sequence = GTTCACTCTGCGAAC Gene: CE1133: Hydroxybenzoate hydroxylase (EC 1.14.13.2) |
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Corynebacterium glutamicum ATCC 13032 Site: position = -119 score = 5.80866 sequence = GTTCGCAAGGCGAAC Gene: cg1226: Hydroxybenzoate hydroxylase (EC 1.14.13.2) |
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Hydroxybenzoate hydroxylase (EC 1.14.13.2) |
| pcaK |
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Gene: CE1131: 4-hydroxybenzoate transporter |
Gene: cg1225: 4-hydroxybenzoate transporter |
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4-hydroxybenzoate transporter |
| CRON 4. | |||||||||
| pcaH |
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*
Corynebacterium efficiens YS-314 Site: position = -82 score = 5.88328 sequence = GTCCGCTCTGCGAAC Gene: CE2301: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -81 score = 5.74819 sequence = GTTCGCCCCGCGAAC Gene: cg2631: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) |
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Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) |
| pcaG |
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Gene: CE2300: Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) |
Gene: cg2630: Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) |
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Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) |
| pcaB |
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Gene: CE2299: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) |
Gene: cg2629: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) |
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3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) |
| pcaC |
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Gene: CE2298: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
Gene: cg2628: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
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4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |