Regulog PcaR - Corynebacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	IclR
Regulation mode:	repressor
Biological process:	Protocatechuate degradation
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Corynebacteriaceae
By TF family - IclR
By pathway - Protocatechuate degradation

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314	7	4
Corynebacterium glutamicum ATCC 13032	12	4
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
pcaR	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = 10 score = 5.86487 sequence = GTTCGCTGAGCGAAC Gene: CE2294: Protocoatechuate utilization transription regulator PcaR, IclR family	* Corynebacterium glutamicum ATCC 13032 Site: position = -34 score = 6.05731 sequence = GTTCGCAATGCGAAC Gene: cg2624: Protocoatechuate utilization transription regulator PcaR, IclR family	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Protocoatechuate utilization transription regulator PcaR, IclR family
pcaF	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2295: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Corynebacterium glutamicum ATCC 13032 Gene: cg2625: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
pcaL	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2296: Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)	Corynebacterium glutamicum ATCC 13032 Gene: cg2626: Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)
pcaO	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2297: Protocoatechuate utilization transription regulator PcaO, LuxR family	Corynebacterium glutamicum ATCC 13032 Gene: cg2627: Protocoatechuate utilization transription regulator PcaO, LuxR family	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Protocoatechuate utilization transription regulator PcaO, LuxR family

CRON 2.
pcaI	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = 51 score = 6.11352 sequence = GTTCGCTCAGCGAAC Gene: CE2293: 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6)	* Corynebacterium glutamicum ATCC 13032 Site: position = -45 score = 5.94063 sequence = GTTCGCATTGCGAAC Gene: cg2623: 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6)
pcaJ	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2292: 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6)	Corynebacterium glutamicum ATCC 13032 Gene: cg2622: 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6)

CRON 3.
pobA	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -186 score = 5.88328 sequence = GTTCACTCTGCGAAC Gene: CE1133: Hydroxybenzoate hydroxylase (EC 1.14.13.2)	* Corynebacterium glutamicum ATCC 13032 Site: position = -119 score = 5.80866 sequence = GTTCGCAAGGCGAAC Gene: cg1226: Hydroxybenzoate hydroxylase (EC 1.14.13.2)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Hydroxybenzoate hydroxylase (EC 1.14.13.2)
pcaK	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE1131: 4-hydroxybenzoate transporter	Corynebacterium glutamicum ATCC 13032 Gene: cg1225: 4-hydroxybenzoate transporter	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	4-hydroxybenzoate transporter

CRON 4.
pcaH	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -82 score = 5.88328 sequence = GTCCGCTCTGCGAAC Gene: CE2301: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)	* Corynebacterium glutamicum ATCC 13032 Site: position = -81 score = 5.74819 sequence = GTTCGCCCCGCGAAC Gene: cg2631: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
pcaG	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2300: Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)	Corynebacterium glutamicum ATCC 13032 Gene: cg2630: Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)
pcaB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2299: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)	Corynebacterium glutamicum ATCC 13032 Gene: cg2629: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)
pcaC	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2298: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)	Corynebacterium glutamicum ATCC 13032 Gene: cg2628: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	4-carboxymuconolactone decarboxylase (EC 4.1.1.44)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PcaR - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --