Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of AmtR regulog to Corynebacterium glutamicum R

Reference regulog properties
Source regulog: AmtR - Corynebacteriaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Nitrogen metabolism
Effector: GlnK-AMP, signal transduction protein
Phylum: Actinobacteria
Propagated regulon:
Target genome Corynebacterium glutamicum R
Orthologous TF(s) cgR_0978
Regulated genes 14
Built upon 42 sites [see more]
Predicted regulatory interactions in Corynebacterium glutamicum R
Locus tag Position Score Sequence
Position: -79
Score: 5.7
Sequence: CATTTCTATCAATCTATAGAAAGT
Position: -33
Score: 6
Sequence: AGTTTCTATAGATTGATAGAAAAG
Locus tag: cgR_0095
cgR_0095 -79 5.7 CATTTCTATCAATCTATAGAAAGT
-33 6 AGTTTCTATAGATTGATAGAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: crnT
Ortholog function: Creatinine transporter
Corynebacterium efficiens YS-314 CE2850 -72 5.3 TAATTCTATAGATCAATAGAATTA
-27 5.7 AGTTTCTATCACTCAATAGAAAAG
Corynebacterium glutamicum ATCC 13032 cg0103 -79 5.7 CATTTCTATCAATCTATAGAAAGT
-33 6 AGTTTCTATAGATTGATAGAAAAG
Position: -85
Score: 4.9
Sequence: GATACCTGTCAATCAATAGAATAG
Locus tag: cgR_0096
cgR_0096 -85 4.9 GATACCTGTCAATCAATAGAATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: codA
Ortholog function: Cytosine deaminase (EC 3.5.4.1)
Corynebacterium glutamicum ATCC 13032 cg0104 -60 4.9 AATACCTGTCAAGCAATAGAATAG
Position: -31
Score: 4.8
Sequence: AATTTCTGTTACCTGACAGAAAGG
Locus tag: cgR_0103
cgR_0103 -31 4.8 AATTTCTGTTACCTGACAGAAAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ureA
Ortholog function: Urease, gamma subunit (EC 3.5.1.5)
Corynebacterium efficiens YS-314 CE0993 -25 4.7 TCTAACTATTGACTTATAGTTATT
Corynebacterium glutamicum ATCC 13032 cg0113 -31 4.8 AATTTCTGTTACCTGACAGAAAGG
Position: -110
Score: 5.5
Sequence: ACTTTCGATCAACCTATAGGAAAA
Locus tag: cgR_0262
cgR_0262 -110 5.5 ACTTTCGATCAACCTATAGGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hkm
Ortholog function: Predicted sensor histidine kinase of two-component system
Corynebacterium efficiens YS-314 CE0157 -113 5.1 GGTTTCTATTAATCATTCGATAAT
-46 5.7 ATTTTCGATCAACCTATAGGAAAA
Corynebacterium glutamicum ATCC 13032 cg0228 -179 5.4 TGTTTCTATCAATCGTTCGATAAT
-110 5.5 ACTTTCGATCAACCTATAGGAAAA
Position: -46
Score: 5.5
Sequence: ATTATCGAACGATTGATAGAAACA
Locus tag: cgR_0263
cgR_0263 -46 5.5 ATTATCGAACGATTGATAGAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Corynebacterium efficiens YS-314 CE0158 -107 5.4 TTTTCCTATAGGTTGATCGAAAAT
-40 5.1 ATTATCGAATGATTAATAGAAACC
Corynebacterium glutamicum ATCC 13032 cg0229 -115 5.3 TTTTCCTATAGGTTGATCGAAAGT
-46 5.5 ATTATCGAACGATTGATAGAAACA
Position: -40
Score: 6.2
Sequence: AGTATCTATAGATTGATAGAAAAT
Locus tag: cgR_1228
cgR_1228 -40 6.2 AGTATCTATAGATTGATAGAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cg1295
Ortholog function: Predicted hydrolase/acyltransferase
Corynebacterium glutamicum ATCC 13032 cg1295 -40 6.2 AGTATCTATAGATTGATAGAAAAT
Position: -41
Score: 6
Sequence: ATTTTCTATCAATCTATAGATACT
Locus tag: cgR_1229
cgR_1229 -41 6 ATTTTCTATCAATCTATAGATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cg1296
Ortholog function: Predicted non-ribosomal peptide synthetase
Corynebacterium glutamicum ATCC 13032 cg1296 -41 6 ATTTTCTATCAATCTATAGATACT
Position: -64
Score: 5.3
Sequence: TTTATCTATAGCGGAATAGAAAAT
Locus tag: cgR_1631
cgR_1631 -64 5.3 TTTATCTATAGCGGAATAGAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtA
Ortholog function: Ammonium transporter
Corynebacterium efficiens YS-314 CE1701 -99 5.3 TTAAACTATTGACCGATAGAAACA
-65 5.1 GTTATCTGTTATGCAATAGAAAAT
Corynebacterium glutamicum ATCC 13032 cg1785 -100 5.2 GAAATCTATAGAACGATAGGTAAA
-64 5.3 TTTATCTATAGCGGAATAGAAAAT
Position: -169
Score: 5.1
Sequence: AATATCTATCAGGTAATAGGTAAA
Locus tag: cgR_1780
cgR_1780 -169 5.1 AATATCTATCAGGTAATAGGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gluA
Ortholog function: Glutamate ABC transporter, ATP-binding protein
Corynebacterium efficiens YS-314 CE1844 -110 4.9 TTTACCTATTGAGCTATTGATAAA
Corynebacterium glutamicum ATCC 13032 cg2136 -193 5.2 AATATCTATCATGTGATAGGTAAA
Position: -219
Score: 5.7
Sequence: AATTTCTATCAAACTATAGAAAGA
Locus tag: cgR_1819
cgR_1819 -219 5.7 AATTTCTATCAAACTATAGAAAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cg2181
Ortholog function: Predicted ABC transporter, substrate-binding protein
Corynebacterium glutamicum ATCC 13032 cg2181 -218 5.7 AATTTCTATCAAACTATAGAAAGA
Position: -141
Score: 5.6
Sequence: ATATTCTATAGAGCTATCGAAATT
Locus tag: cgR_1948
cgR_1948 -141 5.6 ATATTCTATAGAGCTATCGAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB
Ortholog function: Ammonium transporter
Corynebacterium efficiens YS-314 CE1968 -168 5.3 GAATTCTATCGACCTATCGAAAGT
Corynebacterium glutamicum ATCC 13032 cg2261 -183 5.4 ATTACCTGTTAAACTATAGAAAAT
-140 5 CTATTCTATAGATCTATTGAAATT
Position: -149
Score: 5.2
Sequence: AGTTTTGATAGATCGACAGGTAAT
Locus tag: cgR_2093
cgR_2093 -149 5.2 AGTTTTGATAGATCGACAGGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Corynebacterium diphtheriae NCTC 13129 DIP1644 -117 5.4 TTTTTTGATAGCTCTATAGATAAT
Corynebacterium efficiens YS-314 CE2104 -147 5.5 AGTTTTGATAGATCGACAGATAAT
Corynebacterium glutamicum ATCC 13032 cg2429 -149 5.2 AGTTTTGATAGATCGACAGGTAAT
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