Regulog PcaO - Corynebacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LuxR
Regulation mode:	activator
Biological process:	Protocatechuate degradation
Effector:	Protocatechuate
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Corynebacteriaceae
By TF family - LuxR
By effector - Protocatechuate
By pathway - Protocatechuate degradation

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314	4	1
Corynebacterium glutamicum ATCC 13032	4	1
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
pcaH	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -127 score = 6.37725 sequence = ACCCCCAAAGCTGCTGGTGG Gene: CE2301: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)	* Corynebacterium glutamicum ATCC 13032 Site: position = -137 score = 6.37725 sequence = AACCCCTGACCTTCGGGGTT Gene: cg2631: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
pcaG	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2300: Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)	Corynebacterium glutamicum ATCC 13032 Gene: cg2630: Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)
pcaB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2299: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)	Corynebacterium glutamicum ATCC 13032 Gene: cg2629: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)
pcaC	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2298: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)	Corynebacterium glutamicum ATCC 13032 Gene: cg2628: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	4-carboxymuconolactone decarboxylase (EC 4.1.1.44)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PcaO - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --