Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog UriR - Corynebacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Pyrimidine utilization; Uridine utilization
Effector: New effector
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314 4 1
Corynebacterium glutamicum ATCC 13032 5 2
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
uriR
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
*
Corynebacterium efficiens YS-314

Site:
position = -48
score = 6.37364
sequence = ATGTAAACGTTTACAT

Gene: CE1485: Uridine utilization transcriptional regulator UriR, LacI family
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -60
score = 6.23617
sequence = ATGTAATCGTTTGCAG

Gene: cg1547: Uridine utilization transcriptional regulator UriR, LacI family
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Uridine utilization transcriptional regulator UriR, LacI family
rbsK
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_0577: Ribokinase (EC 2.7.1.15)
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP0655: Ribokinase (EC 2.7.1.15)
 
Corynebacterium efficiens YS-314

Gene: CE1484: Ribokinase (EC 2.7.1.15)
*2
Corynebacterium glutamicum ATCC 13032

Gene: cg1546: Ribokinase (EC 2.7.1.15)

Site:
position = -36
score = 6.37364
sequence = ATGAAAACGTTTGCAT

Gene: cg2554: Ribokinase (EC 2.7.1.15)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Ribokinase (EC 2.7.1.15)
uriT
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP1752: Uridine transporter
 
Corynebacterium efficiens YS-314

Gene: CE1483: Uridine transporter
 
Corynebacterium glutamicum ATCC 13032

Gene: cg1545: Uridine transporter
 
Corynebacterium jeikeium K411

Gene: jk2082: Uridine transporter
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109

Gene: cur_2004: Uridine transporter
Uridine transporter
uriH
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP1753: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
 
Corynebacterium efficiens YS-314

Gene: CE1482: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
 
Corynebacterium glutamicum ATCC 13032

Gene: cg1543: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
 
Corynebacterium jeikeium K411

Gene: jk2078: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109

Gene: cur_2003: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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