Regulog RbsR - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Ribose utilization |
| Effector: | Ribose |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By TF family - LacI
- By effector - Ribose
- By pathway - Ribose utilization
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | ||
| Corynebacterium aurimucosum ATCC 700975 | ||
| Corynebacterium diphtheriae NCTC 13129 | 2 | 1 |
| Corynebacterium efficiens YS-314 | 5 | 2 |
| Corynebacterium glutamicum ATCC 13032 | 10 | 3 |
| Corynebacterium jeikeium K411 | ||
| Corynebacterium kroppenstedtii DSM 44385 | ||
| Corynebacterium urealyticum DSM 7109 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| rbsR |
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Corynebacterium diphtheriae NCTC 13129 Site: position = -31 score = 5.99665 sequence = TACGCAAACGTTTGCAGA Gene: DIP0656: Transcriptional repressor of ribose utilization, LacI family |
*
Corynebacterium efficiens YS-314 Site: position = -18 score = 5.42051 sequence = GGTGCAAACGATTGCCCT Gene: CE1349: Transcriptional repressor of ribose utilization, LacI family |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -68 score = 6.09762 sequence = AATGCAATCGATTGCATT Gene: cg1410: Transcriptional repressor of ribose utilization, LacI family |
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Transcriptional repressor of ribose utilization, LacI family |
| rbsA |
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Gene: cg1411: Ribose ABC transporter, ATP-binding protein |
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Ribose ABC transporter, ATP-binding protein |
| rbsC |
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Gene: cg1412: Ribose ABC transporter, permease protein |
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Ribose ABC transporter, permease protein |
| rbsB |
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Gene: cg1413: Ribose ABC transporter, substrate-binding protein |
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Ribose ABC transporter, substrate-binding protein |
| rbsD |
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Gene: cg1414: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1) |
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D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1) |
| uriR |
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Corynebacterium efficiens YS-314 Site: position = -49 score = 5.33109 sequence = AATGTAAACGTTTACATC Gene: CE1485: Pyrimidine utilization transcriptional regulator UriR, LacI family |
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Corynebacterium glutamicum ATCC 13032 Site: position = -61 score = 5.85475 sequence = AATGTAATCGTTTGCAGC Gene: cg1547: Pyrimidine utilization transcriptional regulator UriR, LacI family |
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Pyrimidine utilization transcriptional regulator UriR, LacI family |
| rbsK |
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Gene: DIP0655: Ribokinase (EC 2.7.1.15) |
Gene: CE1484: Ribokinase (EC 2.7.1.15) |
*2
Corynebacterium glutamicum ATCC 13032 Site: position = -37 score = 6.05362 sequence = TATGAAAACGTTTGCATA Gene: cg2554: Ribokinase (EC 2.7.1.15) Gene: cg1546: Ribokinase (EC 2.7.1.15) |
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Ribokinase (EC 2.7.1.15) |
| uriT |
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Gene: CE1483: Uridine transporter |
Gene: cg1545: Uridine transporter |
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Uridine transporter |
| uriH |
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Gene: CE1482: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) |
Gene: cg1543: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) |
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Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |