Regulog RbsR - Corynebacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Ribose utilization
Effector:	Ribose
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Corynebacteriaceae
By TF family - LacI
By effector - Ribose
By pathway - Ribose utilization

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129	2	1
Corynebacterium efficiens YS-314	5	2
Corynebacterium glutamicum ATCC 13032	10	3
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
rbsR	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	* Corynebacterium diphtheriae NCTC 13129 Site: position = -31 score = 5.99665 sequence = TACGCAAACGTTTGCAGA Gene: DIP0656: Transcriptional repressor of ribose utilization, LacI family	* Corynebacterium efficiens YS-314 Site: position = -18 score = 5.42051 sequence = GGTGCAAACGATTGCCCT Gene: CE1349: Transcriptional repressor of ribose utilization, LacI family	* Corynebacterium glutamicum ATCC 13032 Site: position = -68 score = 6.09762 sequence = AATGCAATCGATTGCATT Gene: cg1410: Transcriptional repressor of ribose utilization, LacI family	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Transcriptional repressor of ribose utilization, LacI family
rbsA	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg1411: Ribose ABC transporter, ATP-binding protein	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Ribose ABC transporter, ATP-binding protein
rbsC	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg1412: Ribose ABC transporter, permease protein	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Ribose ABC transporter, permease protein
rbsB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg1413: Ribose ABC transporter, substrate-binding protein	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Ribose ABC transporter, substrate-binding protein
rbsD	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg1414: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
uriR	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -49 score = 5.33109 sequence = AATGTAAACGTTTACATC Gene: CE1485: Pyrimidine utilization transcriptional regulator UriR, LacI family	* Corynebacterium glutamicum ATCC 13032 Site: position = -61 score = 5.85475 sequence = AATGTAATCGTTTGCAGC Gene: cg1547: Pyrimidine utilization transcriptional regulator UriR, LacI family	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Pyrimidine utilization transcriptional regulator UriR, LacI family
rbsK	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129 Gene: DIP0655: Ribokinase (EC 2.7.1.15)	Corynebacterium efficiens YS-314 Gene: CE1484: Ribokinase (EC 2.7.1.15)	2 Corynebacterium glutamicum ATCC 13032* Site: position = -37 score = 6.05362 sequence = TATGAAAACGTTTGCATA Gene: cg2554: Ribokinase (EC 2.7.1.15) Gene: cg1546: Ribokinase (EC 2.7.1.15)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Ribokinase (EC 2.7.1.15)
uriT	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE1483: Uridine transporter	Corynebacterium glutamicum ATCC 13032 Gene: cg1545: Uridine transporter	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Uridine transporter
uriH	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE1482: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	Corynebacterium glutamicum ATCC 13032 Gene: cg1543: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RbsR - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --