Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PaaR regulog to Corynebacterium efficiens YS-314

Reference regulog properties
Source regulog: PaaR - Corynebacteriaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Actinobacteria
Propagated regulon:
Target genome Corynebacterium efficiens YS-314
Orthologous TF(s) CE0665
Regulated genes 5
Built upon 14 sites [see more]
Predicted regulatory interactions in Corynebacterium efficiens YS-314
Locus tag Position Score Sequence
Position: -58
Score: 5.4
Sequence: TACTACCGTCCATTCGGTAAGT
Locus tag: CE0666
CE0666 -58 5.4 TACTACCGTCCATTCGGTAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaI
Ortholog function: Phenylacetic acid degradation protein PaaI, thioesterase
Corynebacterium efficiens YS-314 CE0666 -58 5.4 TACTACCGTCCATTCGGTAAGT
Position: -128
Score: 6.4
Sequence: ACTGACCGGGCGGTCGGTTAGT
Locus tag: CE0667
CE0667 -128 6.4 ACTGACCGGGCGGTCGGTTAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaA
Ortholog function: Phenylacetate-CoA oxygenase, PaaA subunit
Corynebacterium efficiens YS-314 CE0667 -132 4.6 ATATACTGACCGGGCGGTCGGT
-128 6.4 ACTGACCGGGCGGTCGGTTAGT
Position: -47
Score: 6.6
Sequence: AGTTACCGAACGGCCGGTCAGT
Locus tag: CE0676
CE0676 -47 6.6 AGTTACCGAACGGCCGGTCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaY
Ortholog function: hypothetical protein
Corynebacterium efficiens YS-314 CE0676 -47 6.6 AGTTACCGAACGGCCGGTCAGT
-43 5.2 ACCGAACGGCCGGTCAGTAATT
Position: -121
Score: 6
Sequence: ACTGACCGGCCGTTCGGTAACT
Locus tag: CE0677
CE0677 -121 6 ACTGACCGGCCGTTCGGTAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaZ
Ortholog function: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Corynebacterium efficiens YS-314 CE0677 -125 5.1 AATTACTGACCGGCCGTTCGGT
-121 6 ACTGACCGGCCGTTCGGTAACT
Position: -23
Score: 6
Sequence: AACAACCGCACGATCGGTATGT
Locus tag: CE1635
CE1635 -23 6 AACAACCGCACGATCGGTATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisE
Ortholog function: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
Corynebacterium efficiens YS-314 CE1635 -23 6 AACAACCGCACGATCGGTATGT
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