Draft regulons reconstructed by automated conservative propagation


Template (reference) regulons			Propagated regulons
Regulog collection	Genomes	TF regulons		Taxonomic group	Genomes	TF regulons
Chloroflexi	5	107	➠	Chloroflexi	14	139

Studied genomes and reconstructed regulon statistics
	Genomes	Regulons	Sites
*	Chloroflexus aggregans DSM 9485	23	59
	Chloroflexus aurantiacus J-10-fl	24	65
*	Chloroflexus sp. Y-400-fl	25	62
	Dehalococcoides ethenogenes 195	1	2
	Dehalococcoides sp. BAV1	1	1
	Dehalococcoides sp. CBDB1	1	1
	Dehalococcoides sp. GT	1	1
	Dehalococcoides sp. VS	1	2
*	Herpetosiphon aurantiacus ATCC 23779	13	37
*	Roseiflexus castenholzii DSM 13941	20	56
*	Roseiflexus sp. RS-1	20	54
	Sphaerobacter thermophilus DSM 20745	4	4
	Thermobaculum terrenum ATCC BAA-798	3	4
	Thermomicrobium roseum DSM 5159	2	2

*	- reference regulons from this genome have been used as a template for the conservative propagation

Genomic distribution of propagated regulons

Reference regulog
AcrR	2 AcrR Chloroflexus aggregans DSM 9485	2 AcrR Chloroflexus aurantiacus J-10-fl	2 AcrR Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	2 AcrR Roseiflexus castenholzii DSM 13941	1 AcrR Roseiflexus sp. RS-1	-	-	-
BfrR	1 BfrR Chloroflexus aggregans DSM 9485	1 BfrR Chloroflexus aurantiacus J-10-fl	1 BfrR Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	-	-	-	-	-
Cagg_1084	2 Cagg_1084 Chloroflexus aggregans DSM 9485	2 Cagg_1084 Chloroflexus aurantiacus J-10-fl	2 Cagg_1084 Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	-	-	-	-	-
Cagg_3094	1 Cagg_3094 Chloroflexus aggregans DSM 9485	1 Cagg_3094 Chloroflexus aurantiacus J-10-fl	1 Cagg_3094 Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	1 Cagg_3094 Roseiflexus castenholzii DSM 13941	1 Cagg_3094 Roseiflexus sp. RS-1	1 Cagg_3094 Sphaerobacter thermophilus DSM 20745	-	-
Caur_1157	1 Caur_1157 Chloroflexus aggregans DSM 9485	-	1 Caur_1157 Chloroflexus sp. Y-400-fl	-	-	-	-	-	3 Caur_1157 Herpetosiphon aurantiacus ATCC 23779	-	-	-	-	-
Caur_1779	2 Caur_1779 Chloroflexus aggregans DSM 9485	2 Caur_1779 Chloroflexus aurantiacus J-10-fl	2 Caur_1779 Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	-	-	-	-	-
Caur_3401	1 Caur_3401 Chloroflexus aggregans DSM 9485	1 Caur_3401 Chloroflexus aurantiacus J-10-fl	1 Caur_3401 Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	1 Caur_3401 Roseiflexus castenholzii DSM 13941	1 Caur_3401 Roseiflexus sp. RS-1	-	-	-
Caur_3448	1 Caur_3448 Chloroflexus aggregans DSM 9485	1 Caur_3448 Chloroflexus aurantiacus J-10-fl	1 Caur_3448 Chloroflexus sp. Y-400-fl	-	-	-	-	-	1 Caur_3448 Herpetosiphon aurantiacus ATCC 23779	1 Caur_3448 Roseiflexus castenholzii DSM 13941	1 Caur_3448 Roseiflexus sp. RS-1	-	-	-
Caur_3587	1 Caur_3587 Chloroflexus aggregans DSM 9485	2 Caur_3587 Chloroflexus aurantiacus J-10-fl	2 Caur_3587 Chloroflexus sp. Y-400-fl	-	-	-	-	-	1 Caur_3587 Herpetosiphon aurantiacus ATCC 23779	2 Caur_3587 Roseiflexus castenholzii DSM 13941	2 Caur_3587 Roseiflexus sp. RS-1	-	-	-
Caur_3866	-	1 Caur_3866 Chloroflexus aurantiacus J-10-fl	1 Caur_3866 Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	-	-	-	-	-
FetR	2 FetR Chloroflexus aggregans DSM 9485	5 FetR Chloroflexus aurantiacus J-10-fl	5 FetR Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	3 FetR Roseiflexus castenholzii DSM 13941	3 FetR Roseiflexus sp. RS-1	-	-	-
HcpR	2 HcpR Chloroflexus aggregans DSM 9485	-	-	-	-	-	-	-	-	1 HcpR Roseiflexus castenholzii DSM 13941	1 HcpR Roseiflexus sp. RS-1	-	-	-
HpdR	1 HpdR Chloroflexus aggregans DSM 9485	1 HpdR Chloroflexus aurantiacus J-10-fl	1 HpdR Chloroflexus sp. Y-400-fl	-	-	-	-	-	1 HpdR Herpetosiphon aurantiacus ATCC 23779	-	-	-	-	-
HrcA	2 HrcA Chloroflexus aggregans DSM 9485	2 HrcA Chloroflexus aurantiacus J-10-fl	2 HrcA Chloroflexus sp. Y-400-fl	-	-	-	-	-	2 HrcA Herpetosiphon aurantiacus ATCC 23779	2 HrcA Roseiflexus castenholzii DSM 13941	2 HrcA Roseiflexus sp. RS-1	1 HrcA Sphaerobacter thermophilus DSM 20745	1 HrcA Thermobaculum terrenum ATCC BAA-798	1 HrcA Thermomicrobium roseum DSM 5159
KojR	1 KojR Chloroflexus aggregans DSM 9485	1 KojR Chloroflexus aurantiacus J-10-fl	1 KojR Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	-	-	-	-	-
LexA	9 LexA Chloroflexus aggregans DSM 9485	10 LexA Chloroflexus aurantiacus J-10-fl	9 LexA Chloroflexus sp. Y-400-fl	2 LexA Dehalococcoides ethenogenes 195	1 LexA Dehalococcoides sp. BAV1	1 LexA Dehalococcoides sp. CBDB1	1 LexA Dehalococcoides sp. GT	2 LexA Dehalococcoides sp. VS	9 LexA Herpetosiphon aurantiacus ATCC 23779	10 LexA Roseiflexus castenholzii DSM 13941	10 LexA Roseiflexus sp. RS-1	1 LexA Sphaerobacter thermophilus DSM 20745	-	1 LexA Thermomicrobium roseum DSM 5159
MhpR	2 MhpR Chloroflexus aggregans DSM 9485	2 MhpR Chloroflexus aurantiacus J-10-fl	2 MhpR Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	-	1 MhpR Roseiflexus sp. RS-1	-	-	-
MntR	2 MntR Chloroflexus aggregans DSM 9485	1 MntR Chloroflexus aurantiacus J-10-fl	1 MntR Chloroflexus sp. Y-400-fl	-	-	-	-	-	1 MntR Herpetosiphon aurantiacus ATCC 23779	2 MntR Roseiflexus castenholzii DSM 13941	3 MntR Roseiflexus sp. RS-1	-	-	-
ModR	1 ModR Chloroflexus aggregans DSM 9485	2 ModR Chloroflexus aurantiacus J-10-fl	2 ModR Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	1 ModR Roseiflexus castenholzii DSM 13941	-	-	1 ModR Thermobaculum terrenum ATCC BAA-798	-
NagR	-	1 NagR Chloroflexus aurantiacus J-10-fl	1 NagR Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	1 NagR Roseiflexus castenholzii DSM 13941	1 NagR Roseiflexus sp. RS-1	-	-	-
NrdR	1 NrdR Chloroflexus aggregans DSM 9485	1 NrdR Chloroflexus aurantiacus J-10-fl	1 NrdR Chloroflexus sp. Y-400-fl	-	-	-	-	-	1 NrdR Herpetosiphon aurantiacus ATCC 23779	1 NrdR Roseiflexus castenholzii DSM 13941	1 NrdR Roseiflexus sp. RS-1	-	-	-
NrtR	4 NrtR Chloroflexus aggregans DSM 9485	4 NrtR Chloroflexus aurantiacus J-10-fl	4 NrtR Chloroflexus sp. Y-400-fl	-	-	-	-	-	4 NrtR Herpetosiphon aurantiacus ATCC 23779	4 NrtR Roseiflexus castenholzii DSM 13941	4 NrtR Roseiflexus sp. RS-1	-	-	-
Rcas_2304	-	-	-	-	-	-	-	-	-	1 Rcas_2304 Roseiflexus castenholzii DSM 13941	1 Rcas_2304 Roseiflexus sp. RS-1	-	-	-
Rcas_3562	-	-	-	-	-	-	-	-	-	1 Rcas_3562 Roseiflexus castenholzii DSM 13941	1 Rcas_3562 Roseiflexus sp. RS-1	-	-	-
Rex	11 Rex Chloroflexus aggregans DSM 9485	10 Rex Chloroflexus aurantiacus J-10-fl	10 Rex Chloroflexus sp. Y-400-fl	-	-	-	-	-	4 Rex Herpetosiphon aurantiacus ATCC 23779	11 Rex Roseiflexus castenholzii DSM 13941	10 Rex Roseiflexus sp. RS-1	1 Rex Sphaerobacter thermophilus DSM 20745	2 Rex Thermobaculum terrenum ATCC BAA-798	-
RhmR	-	1 RhmR Chloroflexus aurantiacus J-10-fl	1 RhmR Chloroflexus sp. Y-400-fl	-	-	-	-	-	-	-	-	-	-	-
SufR	1 SufR Chloroflexus aggregans DSM 9485	1 SufR Chloroflexus aurantiacus J-10-fl	1 SufR Chloroflexus sp. Y-400-fl	-	-	-	-	-	1 SufR Herpetosiphon aurantiacus ATCC 23779	1 SufR Roseiflexus castenholzii DSM 13941	1 SufR Roseiflexus sp. RS-1	-	-	-
Zur	5 Zur Chloroflexus aggregans DSM 9485	2 Zur Chloroflexus aurantiacus J-10-fl	1 Zur Chloroflexus sp. Y-400-fl	-	-	-	-	-	7 Zur Herpetosiphon aurantiacus ATCC 23779	2 Zur Roseiflexus castenholzii DSM 13941	2 Zur Roseiflexus sp. RS-1	-	-	-
Zur2	-	-	-	-	-	-	-	-	1 Zur2 Herpetosiphon aurantiacus ATCC 23779	5 Zur2 Roseiflexus castenholzii DSM 13941	5 Zur2 Roseiflexus sp. RS-1	-	-	-

-- Legend --

5	Orthologous regulator is detected and five members of regulon are predicted in a target genome
-	Orthologous regulator is detected in a target genome but no potential members of regulon where identified
3	Three potential members of regulon were found, but orthologous regulator could not be detected in a target genome.
3	Neither orthologous regulator no potential members of regulon were found in a target genome

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Draft regulons reconstructed by automated conservative propagation

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --