Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Dehalococcoides sp. VS

Reference regulog properties
Source regulog: LexA - Chloroflexia
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Chloroflexi
Propagated regulon:
Target genome Dehalococcoides sp. VS
Orthologous TF(s) DeVSDRAFT_1438
Regulated genes 2
Built upon 52 sites [see more]
Predicted regulatory interactions in Dehalococcoides sp. VS
Locus tag Position Score Sequence
Position: -27
Score: 4.7
Sequence: TGGAATATTTGTGCTA
Locus tag: DeVSDRAFT_1493
DeVSDRAFT_1493 -27 4.7 TGGAATATTTGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ruvB
Ortholog function: Holliday junction DNA helicase RuvB
Chloroflexus aggregans DSM 9485 Cagg_0868 -37 4.8 GCGTACACCTGTGCGA
Chloroflexus sp. Y-400-fl Chy400_3332 -37 4.8 GCGTACACCTGTGCGA
Roseiflexus castenholzii DSM 13941 Rcas_3053 -24 4.7 CCGCACACGTGTGCGG
Roseiflexus sp. RS-1 RoseRS_2425 -24 4.7 CCGCACACGTGTGCGG
Herpetosiphon aurantiacus ATCC 23779 Haur_2295 -37 4 GCGACCGTCTGTGCTA
Position: -56
Score: 4.1
Sequence: TAGAACACATGTTTTG
Locus tag: DeVSDRAFT_0627
DeVSDRAFT_0627 -56 4.1 TAGAACACATGTTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrA
Ortholog function: Excinuclease ABC subunit A
Roseiflexus castenholzii DSM 13941 Rcas_4419 -107 4.7 TCGCACACCTGTTCAC
Roseiflexus sp. RS-1 RoseRS_3438 -103 4 TCGCACGTCTGTTCAT
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