Regulog LexA - Chloroflexia
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Chloroflexi |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Chloroflexi
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | 12 | 9 |
| Chloroflexus sp. Y-400-fl | 11 | 9 |
| Roseiflexus castenholzii DSM 13941 | 12 | 10 |
| Roseiflexus sp. RS-1 | 13 | 10 |
| Herpetosiphon aurantiacus ATCC 23779 | 13 | 10 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| ftsK |
*
Chloroflexus aggregans DSM 9485 Site: position = -152 score = 4.55972 sequence = TCGCACAAATATGCTA Gene: Cagg_2352: Cell division protein FtsK |
*
Chloroflexus sp. Y-400-fl Site: position = -67 score = 4.55972 sequence = TCGCACAAATATGCTA Gene: Chy400_1345: Cell division protein FtsK |
Gene: Rcas_1193: Cell division protein FtsK |
Gene: RoseRS_0820: Cell division protein FtsK |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -73 score = 4.35799 sequence = TCGACCGTGTGTGCTA Gene: Haur_4844: Cell division protein FtsK |
Cell division protein FtsK |
| CRON 2. | ||||||
| mutL |
Gene: Cagg_1936: DNA mismatch repair protein MutL |
Gene: Chy400_1241: DNA mismatch repair protein MutL |
*
Roseiflexus castenholzii DSM 13941 Site: position = -33 score = 4.32795 sequence = TCGCATACGTGTTCGT Gene: Rcas_0100: DNA mismatch repair protein MutL |
*
Roseiflexus sp. RS-1 Site: position = -34 score = 4.39008 sequence = TCGCATACGTGTTCGC Gene: RoseRS_4548: DNA mismatch repair protein MutL |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -76 score = 4.29024 sequence = TAGCTCATTTATGCTA Gene: Haur_2999: DNA mismatch repair protein MutL |
DNA mismatch repair protein MutL |
| CRON 3. | ||||||
| mutS |
Gene: Cagg_3768: DNA mismatch repair protein MutS |
Gene: Chy400_3199: DNA mismatch repair protein MutS |
*
Roseiflexus castenholzii DSM 13941 Site: position = -42 score = 4.72092 sequence = TAGAACATCGGTACGA Gene: Rcas_3531: DNA mismatch repair protein MutS |
*
Roseiflexus sp. RS-1 Site: position = -47 score = 4.72092 sequence = TAGAACATCGGTACGA Gene: RoseRS_3706: DNA mismatch repair protein MutS |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -82 score = 4.45307 sequence = TAGCACAGATGTTCAA Gene: Haur_4078: DNA mismatch repair protein MutS |
DNA mismatch repair protein MutS |
| CRON 4. | ||||||
| polA |
*
Chloroflexus aggregans DSM 9485 Site: position = -207 score = 4.32161 sequence = GAGCACATTCGTGCGC Gene: Cagg_3590: DNA polymerase I (EC 2.7.7.7) |
*
Chloroflexus sp. Y-400-fl Site: position = -30 score = 4.61833 sequence = TAGCAAATCTGTGCGG Gene: Chy400_0368: DNA polymerase I (EC 2.7.7.7) |
Gene: Rcas_1512: DNA polymerase I (EC 2.7.7.7) |
Gene: RoseRS_3415: DNA polymerase I (EC 2.7.7.7) |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -92 score = 4.00978 sequence = ATGAACAAATGTTCGA Gene: Haur_0069: DNA polymerase I (EC 2.7.7.7) |
DNA polymerase I (EC 2.7.7.7) |
| CRON 5. | ||||||
| uvdE |
*
Chloroflexus aggregans DSM 9485 Site: position = -86 score = 4.84086 sequence = TCGAACAAATGTACTA Gene: Cagg_3654: UV damage repair endonuclease-like protein |
*
Chloroflexus sp. Y-400-fl Site: position = -101 score = 4.43199 sequence = ACGAACATTTGTCCTA Gene: Chy400_0262: UV damage repair endonuclease-like protein |
Gene: Rcas_2319: UV damage repair endonuclease-like protein |
Gene: RoseRS_1694: UV damage repair endonuclease-like protein |
Gene: Haur_0383: UV damage repair endonuclease-like protein |
UV damage repair endonuclease-like protein |
| CRON 6. | ||||||
| sbcC |
Gene: Cagg_2951: Exonuclease SbcC |
Gene: Chy400_2419: Exonuclease SbcC |
*
Roseiflexus castenholzii DSM 13941 Site: position = -32 score = 4.14356 sequence = GCGCGCATCTGTTCGA Gene: Rcas_4093: Exonuclease SbcC |
*
Roseiflexus sp. RS-1 Site: position = -34 score = 4.19135 sequence = ACGCGCATCTGTTCGA Gene: RoseRS_0905: Exonuclease SbcC |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -35 score = 4.2788 sequence = TAGCAAATTTGTACGC Gene: Haur_3179: Exonuclease SbcC |
Exonuclease SbcC |
| CRON 7. | ||||||
| uvrA |
2
Chloroflexus aggregans DSM 9485 Gene: Cagg_0015: Excinuclease ABC subunit A Gene: Cagg_2343: Excinuclease ABC subunit A |
2
Chloroflexus sp. Y-400-fl Gene: Chy400_1829: Excinuclease ABC subunit A Gene: Chy400_2856: Excinuclease ABC subunit A |
*2
Roseiflexus castenholzii DSM 13941 Site: position = -107 score = 4.66279 sequence = TCGCACACCTGTTCAC Gene: Rcas_4419: Excinuclease ABC subunit A Gene: Rcas_0572: Excinuclease ABC subunit A |
*2
Roseiflexus sp. RS-1 Site: position = -103 score = 4.02444 sequence = TCGCACGTCTGTTCAT Gene: RoseRS_3438: Excinuclease ABC subunit A Gene: RoseRS_3848: Excinuclease ABC subunit A |
2
Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4118: Excinuclease ABC subunit A Gene: Haur_4583: Excinuclease ABC subunit A |
Excinuclease ABC subunit A |
| CRON 8. | ||||||
| Cagg_1574 |
*
Chloroflexus aggregans DSM 9485 Site: position = -127 score = 4.65812 sequence = AAGAACAATTGTTCTA Gene: Cagg_1574: Conserved hypothetical protein |
*
Chloroflexus sp. Y-400-fl Site: position = -177 score = 5.22956 sequence = TAGAACACTTGTTCTA Gene: Chy400_2036: Conserved hypothetical protein |
*
Roseiflexus castenholzii DSM 13941 Site: position = -129 score = 4.68408 sequence = TAGAACACATGTTCTT Gene: Rcas_2146: Conserved hypothetical protein |
*
Roseiflexus sp. RS-1 Site: position = -135 score = 4.92433 sequence = TAGAACAAATGTTCGA Gene: RoseRS_3028: Conserved hypothetical protein |
|
Conserved hypothetical protein |
| Cagg_1573 |
Gene: Cagg_1573: Conserved hypothetical protein |
Gene: Chy400_2037: Conserved hypothetical protein |
Gene: Rcas_2145: Conserved hypothetical protein |
Gene: RoseRS_3029: Conserved hypothetical protein |
|
Conserved hypothetical protein |
| CRON 9. | ||||||
| parB |
*
Chloroflexus aggregans DSM 9485 Site: position = -73 score = 4.56017 sequence = TGGTACACTTGTTCGG Gene: Cagg_0177: Chromosome partitioning protein ParB |
*
Chloroflexus sp. Y-400-fl Site: position = -74 score = 4.54568 sequence = TGGCACAATTGTTCGG Gene: Chy400_2955: Chromosome partitioning protein ParB |
*
Roseiflexus castenholzii DSM 13941 Site: position = -83 score = 4.57308 sequence = CCGAACATCTGTACTG Gene: Rcas_2543: Chromosome partitioning protein ParB |
*
Roseiflexus sp. RS-1 Site: position = -40 score = 4.59088 sequence = CCGAACACCTGTGCAG Gene: RoseRS_2821: Chromosome partitioning protein ParB |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -58 score = 4.01554 sequence = CAGAATAGGTGTGCTA Gene: Haur_3186: Chromosome partitioning protein ParB |
Chromosome partitioning protein ParB |
| CRON 10. | ||||||
| Haur_4111 |
|
|
|
|
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -8 score = 4.70419 sequence = TAGAATATATGTTCTA Gene: Haur_4111: Hypothetical protein |
Hypothetical protein |
| ssb |
*
Chloroflexus aggregans DSM 9485 Site: position = -88 score = 4.53621 sequence = TAGCACAATAGTTCGA Gene: Cagg_2703: Single-stranded DNA-binding protein |
*
Chloroflexus sp. Y-400-fl Site: position = -88 score = 4.58894 sequence = TCGCACAATAGTTCGA Gene: Chy400_0945: Single-stranded DNA-binding protein |
*
Roseiflexus castenholzii DSM 13941 Site: position = -114 score = 4.34834 sequence = TGGAACATGCATGCTA Gene: Rcas_0027: Single-stranded DNA-binding protein |
*
Roseiflexus sp. RS-1 Site: position = -115 score = 4.34834 sequence = TGGAACATGCATGCTA Gene: RoseRS_0828: Single-stranded DNA-binding protein |
Gene: Haur_4110: Single-stranded DNA-binding protein |
Single-stranded DNA-binding protein |
| CRON 11. | ||||||
| ruvB |
*
Chloroflexus aggregans DSM 9485 Site: position = -37 score = 4.76202 sequence = GCGTACACCTGTGCGA Gene: Cagg_0868: Holliday junction DNA helicase RuvB |
*
Chloroflexus sp. Y-400-fl Site: position = -37 score = 4.76202 sequence = GCGTACACCTGTGCGA Gene: Chy400_3332: Holliday junction DNA helicase RuvB |
*
Roseiflexus castenholzii DSM 13941 Site: position = -24 score = 4.69059 sequence = CCGCACACGTGTGCGG Gene: Rcas_3053: Holliday junction DNA helicase RuvB |
*
Roseiflexus sp. RS-1 Site: position = -24 score = 4.69059 sequence = CCGCACACGTGTGCGG Gene: RoseRS_2425: Holliday junction DNA helicase RuvB |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -37 score = 4.03815 sequence = GCGACCGTCTGTGCTA Gene: Haur_2295: Holliday junction DNA helicase RuvB |
Holliday junction DNA helicase RuvB |
| CRON 12. | ||||||
| Cagg_3684 |
*
Chloroflexus aggregans DSM 9485 Site: position = -90 score = 5.14622 sequence = TCGAACATGTGTGCAA Gene: Cagg_3684: Conserved hypothetical protein |
*
Chloroflexus sp. Y-400-fl Site: position = -85 score = 4.43146 sequence = TAGAACATATGAACTA Gene: Chy400_3255: Conserved hypothetical protein |
*
Roseiflexus castenholzii DSM 13941 Site: position = -86 score = 4.29025 sequence = TCGAACACACGTTCAT Gene: Rcas_4196: Conserved hypothetical protein |
*
Roseiflexus sp. RS-1 Site: position = -86 score = 4.1086 sequence = ACGAACACCCGTTCAC Gene: RoseRS_0046: Conserved hypothetical protein |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -166 score = 4.92332 sequence = TCGAAAATTTGTGCTA Gene: Haur_4373: Conserved hypothetical protein |
Conserved hypothetical protein |
| gyrB |
Gene: Cagg_3685: DNA gyrase subunit B (EC 5.99.1.3) |
Gene: Chy400_3254: DNA gyrase subunit B (EC 5.99.1.3) |
Gene: Rcas_4195: DNA gyrase subunit B (EC 5.99.1.3) |
Gene: RoseRS_0047: DNA gyrase subunit B (EC 5.99.1.3) |
Gene: Haur_4372: DNA gyrase subunit B (EC 5.99.1.3) |
DNA gyrase subunit B (EC 5.99.1.3) |
| CRON 13. | ||||||
| recA |
*
Chloroflexus aggregans DSM 9485 Site: position = -126 score = 5.12661 sequence = TCGTACACTTGTGCTA Site: position = -107 score = 4.79994 sequence = TAGCACATATGTACGG Gene: Cagg_1747: Recombinase A |
*
Chloroflexus sp. Y-400-fl Site: position = -126 score = 5.32602 sequence = TCGCACACCTGTGCTA Site: position = -107 score = 4.79994 sequence = TAGCACATATGTACGG Gene: Chy400_1482: Recombinase A |
*
Roseiflexus castenholzii DSM 13941 Site: position = -137 score = 4.95499 sequence = TAGCCCACTTGTGCGA Site: position = -120 score = 4.25019 sequence = AAGAACCTTCGTGCTA Gene: Rcas_2960: Recombinase A |
*
Roseiflexus sp. RS-1 Site: position = -120 score = 4.25019 sequence = AAGAACCTTCGTGCTA Site: position = -137 score = 4.95499 sequence = TAGCCCACTTGTGCGA Gene: RoseRS_3118: Recombinase A |
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -91 score = 4.74012 sequence = ACGAACAAGTGTGCTA Gene: Haur_4194: Recombinase A |
Recombinase A |
| recX |
Gene: Cagg_1746: Regulatory protein RecX |
Gene: Chy400_1231: Regulatory protein RecX |
|
Gene: RoseRS_3117: Regulatory protein RecX |
Gene: Haur_4193: Regulatory protein RecX |
Regulatory protein RecX |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |