Statistics of regulated genes

Genome	Genes	Operons
Chloroflexus aggregans DSM 9485	12	9
Chloroflexus sp. Y-400-fl	11	9
Roseiflexus castenholzii DSM 13941	12	10
Roseiflexus sp. RS-1	13	10
Herpetosiphon aurantiacus ATCC 23779	13	10

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes						Function
CRON 1.
ftsK	* Chloroflexus aggregans DSM 9485 Site: position = -152 score = 4.55972 sequence = TCGCACAAATATGCTA Gene: Cagg_2352: Cell division protein FtsK	* Chloroflexus sp. Y-400-fl Site: position = -67 score = 4.55972 sequence = TCGCACAAATATGCTA Gene: Chy400_1345: Cell division protein FtsK	Roseiflexus castenholzii DSM 13941 Gene: Rcas_1193: Cell division protein FtsK	Roseiflexus sp. RS-1 Gene: RoseRS_0820: Cell division protein FtsK	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -73 score = 4.35799 sequence = TCGACCGTGTGTGCTA Gene: Haur_4844: Cell division protein FtsK	Cell division protein FtsK
CRON 2.
mutL	Chloroflexus aggregans DSM 9485 Gene: Cagg_1936: DNA mismatch repair protein MutL	Chloroflexus sp. Y-400-fl Gene: Chy400_1241: DNA mismatch repair protein MutL	* Roseiflexus castenholzii DSM 13941 Site: position = -33 score = 4.32795 sequence = TCGCATACGTGTTCGT Gene: Rcas_0100: DNA mismatch repair protein MutL	* Roseiflexus sp. RS-1 Site: position = -34 score = 4.39008 sequence = TCGCATACGTGTTCGC Gene: RoseRS_4548: DNA mismatch repair protein MutL	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -76 score = 4.29024 sequence = TAGCTCATTTATGCTA Gene: Haur_2999: DNA mismatch repair protein MutL	DNA mismatch repair protein MutL
CRON 3.
mutS	Chloroflexus aggregans DSM 9485 Gene: Cagg_3768: DNA mismatch repair protein MutS	Chloroflexus sp. Y-400-fl Gene: Chy400_3199: DNA mismatch repair protein MutS	* Roseiflexus castenholzii DSM 13941 Site: position = -42 score = 4.72092 sequence = TAGAACATCGGTACGA Gene: Rcas_3531: DNA mismatch repair protein MutS	* Roseiflexus sp. RS-1 Site: position = -47 score = 4.72092 sequence = TAGAACATCGGTACGA Gene: RoseRS_3706: DNA mismatch repair protein MutS	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -82 score = 4.45307 sequence = TAGCACAGATGTTCAA Gene: Haur_4078: DNA mismatch repair protein MutS	DNA mismatch repair protein MutS
CRON 4.
polA	* Chloroflexus aggregans DSM 9485 Site: position = -207 score = 4.32161 sequence = GAGCACATTCGTGCGC Gene: Cagg_3590: DNA polymerase I (EC 2.7.7.7)	* Chloroflexus sp. Y-400-fl Site: position = -30 score = 4.61833 sequence = TAGCAAATCTGTGCGG Gene: Chy400_0368: DNA polymerase I (EC 2.7.7.7)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_1512: DNA polymerase I (EC 2.7.7.7)	Roseiflexus sp. RS-1 Gene: RoseRS_3415: DNA polymerase I (EC 2.7.7.7)	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -92 score = 4.00978 sequence = ATGAACAAATGTTCGA Gene: Haur_0069: DNA polymerase I (EC 2.7.7.7)	DNA polymerase I (EC 2.7.7.7)
CRON 5.
uvdE	* Chloroflexus aggregans DSM 9485 Site: position = -86 score = 4.84086 sequence = TCGAACAAATGTACTA Gene: Cagg_3654: UV damage repair endonuclease-like protein	* Chloroflexus sp. Y-400-fl Site: position = -101 score = 4.43199 sequence = ACGAACATTTGTCCTA Gene: Chy400_0262: UV damage repair endonuclease-like protein	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2319: UV damage repair endonuclease-like protein	Roseiflexus sp. RS-1 Gene: RoseRS_1694: UV damage repair endonuclease-like protein	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0383: UV damage repair endonuclease-like protein	UV damage repair endonuclease-like protein
CRON 6.
sbcC	Chloroflexus aggregans DSM 9485 Gene: Cagg_2951: Exonuclease SbcC	Chloroflexus sp. Y-400-fl Gene: Chy400_2419: Exonuclease SbcC	* Roseiflexus castenholzii DSM 13941 Site: position = -32 score = 4.14356 sequence = GCGCGCATCTGTTCGA Gene: Rcas_4093: Exonuclease SbcC	* Roseiflexus sp. RS-1 Site: position = -34 score = 4.19135 sequence = ACGCGCATCTGTTCGA Gene: RoseRS_0905: Exonuclease SbcC	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -35 score = 4.2788 sequence = TAGCAAATTTGTACGC Gene: Haur_3179: Exonuclease SbcC	Exonuclease SbcC
CRON 7.
uvrA	2 Chloroflexus aggregans DSM 9485 Gene: Cagg_0015: Excinuclease ABC subunit A Gene: Cagg_2343: Excinuclease ABC subunit A	2 Chloroflexus sp. Y-400-fl Gene: Chy400_1829: Excinuclease ABC subunit A Gene: Chy400_2856: Excinuclease ABC subunit A	*2 Roseiflexus castenholzii DSM 13941 Site: position = -107 score = 4.66279 sequence = TCGCACACCTGTTCAC Gene: Rcas_4419: Excinuclease ABC subunit A Gene: Rcas_0572: Excinuclease ABC subunit A	*2 Roseiflexus sp. RS-1 Site: position = -103 score = 4.02444 sequence = TCGCACGTCTGTTCAT Gene: RoseRS_3438: Excinuclease ABC subunit A Gene: RoseRS_3848: Excinuclease ABC subunit A	2 Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4118: Excinuclease ABC subunit A Gene: Haur_4583: Excinuclease ABC subunit A	Excinuclease ABC subunit A
CRON 8.
Cagg_1574	* Chloroflexus aggregans DSM 9485 Site: position = -127 score = 4.65812 sequence = AAGAACAATTGTTCTA Gene: Cagg_1574: Conserved hypothetical protein	* Chloroflexus sp. Y-400-fl Site: position = -177 score = 5.22956 sequence = TAGAACACTTGTTCTA Gene: Chy400_2036: Conserved hypothetical protein	* Roseiflexus castenholzii DSM 13941 Site: position = -129 score = 4.68408 sequence = TAGAACACATGTTCTT Gene: Rcas_2146: Conserved hypothetical protein	* Roseiflexus sp. RS-1 Site: position = -135 score = 4.92433 sequence = TAGAACAAATGTTCGA Gene: RoseRS_3028: Conserved hypothetical protein	Herpetosiphon aurantiacus ATCC 23779	Conserved hypothetical protein
Cagg_1573	Chloroflexus aggregans DSM 9485 Gene: Cagg_1573: Conserved hypothetical protein	Chloroflexus sp. Y-400-fl Gene: Chy400_2037: Conserved hypothetical protein	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2145: Conserved hypothetical protein	Roseiflexus sp. RS-1 Gene: RoseRS_3029: Conserved hypothetical protein	Herpetosiphon aurantiacus ATCC 23779	Conserved hypothetical protein
CRON 9.
parB	* Chloroflexus aggregans DSM 9485 Site: position = -73 score = 4.56017 sequence = TGGTACACTTGTTCGG Gene: Cagg_0177: Chromosome partitioning protein ParB	* Chloroflexus sp. Y-400-fl Site: position = -74 score = 4.54568 sequence = TGGCACAATTGTTCGG Gene: Chy400_2955: Chromosome partitioning protein ParB	* Roseiflexus castenholzii DSM 13941 Site: position = -83 score = 4.57308 sequence = CCGAACATCTGTACTG Gene: Rcas_2543: Chromosome partitioning protein ParB	* Roseiflexus sp. RS-1 Site: position = -40 score = 4.59088 sequence = CCGAACACCTGTGCAG Gene: RoseRS_2821: Chromosome partitioning protein ParB	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -58 score = 4.01554 sequence = CAGAATAGGTGTGCTA Gene: Haur_3186: Chromosome partitioning protein ParB	Chromosome partitioning protein ParB
CRON 10.
Haur_4111	Chloroflexus aggregans DSM 9485	Chloroflexus sp. Y-400-fl	Roseiflexus castenholzii DSM 13941	Roseiflexus sp. RS-1	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -8 score = 4.70419 sequence = TAGAATATATGTTCTA Gene: Haur_4111: Hypothetical protein	Hypothetical protein
ssb	* Chloroflexus aggregans DSM 9485 Site: position = -88 score = 4.53621 sequence = TAGCACAATAGTTCGA Gene: Cagg_2703: Single-stranded DNA-binding protein	* Chloroflexus sp. Y-400-fl Site: position = -88 score = 4.58894 sequence = TCGCACAATAGTTCGA Gene: Chy400_0945: Single-stranded DNA-binding protein	* Roseiflexus castenholzii DSM 13941 Site: position = -114 score = 4.34834 sequence = TGGAACATGCATGCTA Gene: Rcas_0027: Single-stranded DNA-binding protein	* Roseiflexus sp. RS-1 Site: position = -115 score = 4.34834 sequence = TGGAACATGCATGCTA Gene: RoseRS_0828: Single-stranded DNA-binding protein	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4110: Single-stranded DNA-binding protein	Single-stranded DNA-binding protein
CRON 11.
ruvB	* Chloroflexus aggregans DSM 9485 Site: position = -37 score = 4.76202 sequence = GCGTACACCTGTGCGA Gene: Cagg_0868: Holliday junction DNA helicase RuvB	* Chloroflexus sp. Y-400-fl Site: position = -37 score = 4.76202 sequence = GCGTACACCTGTGCGA Gene: Chy400_3332: Holliday junction DNA helicase RuvB	* Roseiflexus castenholzii DSM 13941 Site: position = -24 score = 4.69059 sequence = CCGCACACGTGTGCGG Gene: Rcas_3053: Holliday junction DNA helicase RuvB	* Roseiflexus sp. RS-1 Site: position = -24 score = 4.69059 sequence = CCGCACACGTGTGCGG Gene: RoseRS_2425: Holliday junction DNA helicase RuvB	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -37 score = 4.03815 sequence = GCGACCGTCTGTGCTA Gene: Haur_2295: Holliday junction DNA helicase RuvB	Holliday junction DNA helicase RuvB
CRON 12.
Cagg_3684	* Chloroflexus aggregans DSM 9485 Site: position = -90 score = 5.14622 sequence = TCGAACATGTGTGCAA Gene: Cagg_3684: Conserved hypothetical protein	* Chloroflexus sp. Y-400-fl Site: position = -85 score = 4.43146 sequence = TAGAACATATGAACTA Gene: Chy400_3255: Conserved hypothetical protein	* Roseiflexus castenholzii DSM 13941 Site: position = -86 score = 4.29025 sequence = TCGAACACACGTTCAT Gene: Rcas_4196: Conserved hypothetical protein	* Roseiflexus sp. RS-1 Site: position = -86 score = 4.1086 sequence = ACGAACACCCGTTCAC Gene: RoseRS_0046: Conserved hypothetical protein	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -166 score = 4.92332 sequence = TCGAAAATTTGTGCTA Gene: Haur_4373: Conserved hypothetical protein	Conserved hypothetical protein
gyrB	Chloroflexus aggregans DSM 9485 Gene: Cagg_3685: DNA gyrase subunit B (EC 5.99.1.3)	Chloroflexus sp. Y-400-fl Gene: Chy400_3254: DNA gyrase subunit B (EC 5.99.1.3)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_4195: DNA gyrase subunit B (EC 5.99.1.3)	Roseiflexus sp. RS-1 Gene: RoseRS_0047: DNA gyrase subunit B (EC 5.99.1.3)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4372: DNA gyrase subunit B (EC 5.99.1.3)	DNA gyrase subunit B (EC 5.99.1.3)
CRON 13.
recA	* Chloroflexus aggregans DSM 9485 Site: position = -126 score = 5.12661 sequence = TCGTACACTTGTGCTA Site: position = -107 score = 4.79994 sequence = TAGCACATATGTACGG Gene: Cagg_1747: Recombinase A	* Chloroflexus sp. Y-400-fl Site: position = -126 score = 5.32602 sequence = TCGCACACCTGTGCTA Site: position = -107 score = 4.79994 sequence = TAGCACATATGTACGG Gene: Chy400_1482: Recombinase A	* Roseiflexus castenholzii DSM 13941 Site: position = -137 score = 4.95499 sequence = TAGCCCACTTGTGCGA Site: position = -120 score = 4.25019 sequence = AAGAACCTTCGTGCTA Gene: Rcas_2960: Recombinase A	* Roseiflexus sp. RS-1 Site: position = -120 score = 4.25019 sequence = AAGAACCTTCGTGCTA Site: position = -137 score = 4.95499 sequence = TAGCCCACTTGTGCGA Gene: RoseRS_3118: Recombinase A	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -91 score = 4.74012 sequence = ACGAACAAGTGTGCTA Gene: Haur_4194: Recombinase A	Recombinase A
recX	Chloroflexus aggregans DSM 9485 Gene: Cagg_1746: Regulatory protein RecX	Chloroflexus sp. Y-400-fl Gene: Chy400_1231: Regulatory protein RecX	Roseiflexus castenholzii DSM 13941	Roseiflexus sp. RS-1 Gene: RoseRS_3117: Regulatory protein RecX	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4193: Regulatory protein RecX	Regulatory protein RecX

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