Regulon of LexA in Roseiflexus castenholzii DSM 13941

Properties
Regulator type:	Transcription factor
TF locus tag:	Rcas_1071
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Regulog:	LexA - Chloroflexia
Statistics of regulated genes:
- Genes	12
- Operons	10
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 52 sites [see more]

Member of regulog collections

By taxonomy - Chloroflexi
By trascription factor - LexA
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Regulated operons
	Locus Tag	Name	Function
Position: -129 Score: 4.7 Sequence: TAGAACACATGTTCTT Locus tag: Rcas_2146 Name: Cagg_1574 Funciton: Conserved hypothetical protein Locus tag: Rcas_2145 Name: Cagg_1573 Funciton: Conserved hypothetical protein
	Rcas_2146	Cagg_1574	Conserved hypothetical protein
	Rcas_2145	Cagg_1573	Conserved hypothetical protein
Position: -33 Score: 4.3 Sequence: TCGCATACGTGTTCGT Locus tag: Rcas_0100 Name: mutL Funciton: DNA mismatch repair protein MutL
	Rcas_0100	mutL	DNA mismatch repair protein MutL
Position: -42 Score: 4.7 Sequence: TAGAACATCGGTACGA Locus tag: Rcas_3531 Name: mutS Funciton: DNA mismatch repair protein MutS
	Rcas_3531	mutS	DNA mismatch repair protein MutS
Position: -107 Score: 4.7 Sequence: TCGCACACCTGTTCAC Locus tag: Rcas_4419 Name: uvrA Funciton: Excinuclease ABC subunit A
	Rcas_4419	uvrA	Excinuclease ABC subunit A
Position: -114 Score: 4.3 Sequence: TGGAACATGCATGCTA Locus tag: Rcas_0027 Name: ssb Funciton: Single-stranded DNA-binding protein
	Rcas_0027	ssb	Single-stranded DNA-binding protein
Position: -24 Score: 4.7 Sequence: CCGCACACGTGTGCGG Locus tag: Rcas_3053 Name: ruvB Funciton: Holliday junction DNA helicase RuvB
	Rcas_3053	ruvB	Holliday junction DNA helicase RuvB
Position: -86 Score: 4.3 Sequence: TCGAACACACGTTCAT Locus tag: Rcas_4196 Name: Cagg_3684 Funciton: Conserved hypothetical protein Locus tag: Rcas_4195 Name: gyrB Funciton: DNA gyrase subunit B (EC 5.99.1.3)
	Rcas_4196	Cagg_3684	Conserved hypothetical protein
	Rcas_4195	gyrB	DNA gyrase subunit B (EC 5.99.1.3)
Position: -137 Score: 5 Sequence: TAGCCCACTTGTGCGA Position: -120 Score: 4.3 Sequence: AAGAACCTTCGTGCTA Locus tag: Rcas_2960 Name: recA Funciton: Recombinase A
	Rcas_2960	recA	Recombinase A
Position: -32 Score: 4.1 Sequence: GCGCGCATCTGTTCGA Locus tag: Rcas_4093 Name: sbcC Funciton: Exonuclease SbcC
	Rcas_4093	sbcC	Exonuclease SbcC
Position: -83 Score: 4.6 Sequence: CCGAACATCTGTACTG Locus tag: Rcas_2543 Name: parB Funciton: Chromosome partitioning protein ParB
	Rcas_2543	parB	Chromosome partitioning protein ParB

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LexA in Roseiflexus castenholzii DSM 13941

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --