Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Rex regulog to Roseiflexus castenholzii DSM 13941

Reference regulog properties
Source regulog: Rex - Chloroflexia
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Chloroflexi
Propagated regulon:
Target genome Roseiflexus castenholzii DSM 13941
Orthologous TF(s) Rcas_1392
Regulated genes 12
Built upon 49 sites [see more]
Predicted regulatory interactions in Roseiflexus castenholzii DSM 13941
Locus tag Position Score Sequence
Position: -36
Score: 4.4
Sequence: TTGTGAAAGTGTTCTCAA
Locus tag: Rcas_1271
Rcas_1271 -36 4.4 TTGTGAAAGTGTTCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpB
Ortholog function: ATP synthase A chain (EC 3.6.3.14)
Chloroflexus aggregans DSM 9485 Cagg_0991 -105 4.3 TTGTGAAAGACTGAACAA
Chloroflexus sp. Y-400-fl Chy400_3293 -109 4 TTGTGAAAGATCGAACAA
Roseiflexus castenholzii DSM 13941 Rcas_1271 -36 4.4 TTGTGAAAGTGTTCTCAA
Roseiflexus sp. RS-1 RoseRS_0518 -44 4.4 TTGTGAAAGTGTTCTCAA
Position: -109
Score: 4.3
Sequence: TAGTGCTACACTTCACAT
Locus tag: Rcas_1392
Rcas_1392 -109 4.3 TAGTGCTACACTTCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rex
Ortholog function: Redox-sensitive transcriptional regulator Rex
Chloroflexus aggregans DSM 9485 Cagg_0157 -47 4.7 TTGTGCTACACTTCACAT
Chloroflexus sp. Y-400-fl Chy400_3940 -55 4.7 TTGTGCTACACTTCACAT
Herpetosiphon aurantiacus ATCC 23779 Haur_4427 -121 4.3 TTGCACTATACTTCACAA
Roseiflexus castenholzii DSM 13941 Rcas_1392 -109 4.3 TAGTGCTACACTTCACAT
Roseiflexus sp. RS-1 RoseRS_4103 -157 4.3 TAGTGCTACACTTCACAT
Position: -64
Score: 5
Sequence: TTGTGATATACTCAACAA
Locus tag: Rcas_2088
Rcas_2088 -64 5 TTGTGATATACTCAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoA
Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Chloroflexus aggregans DSM 9485 Cagg_1631 -55 5.2 TTGTGATATACTTCTCAT
Chloroflexus sp. Y-400-fl Chy400_2142 -54 5.2 TTGTGATATACTTCTCAT
Herpetosiphon aurantiacus ATCC 23779 Haur_4980 -117 5.1 CTGTGATATACTTCGCAA
Roseiflexus castenholzii DSM 13941 Rcas_2088 -64 5 TTGTGATATACTCAACAA
Position: -48
Score: 5.8
Sequence: TTGTTATGTATTTCACAA
Locus tag: Rcas_2323
Rcas_2323 -48 5.8 TTGTTATGTATTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hepT
Ortholog function: Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)
Chloroflexus aggregans DSM 9485 Cagg_0899 -125 5.4 TTGTGGCGAATATCACAA
Chloroflexus sp. Y-400-fl Chy400_4040 -123 5.7 TTGTGGTGAATATCACAA
Herpetosiphon aurantiacus ATCC 23779 Haur_2345 -44 4.6 ACGCGATAACTTTCACAA
Roseiflexus castenholzii DSM 13941 Rcas_2323 -48 5.8 TTGTTATGTATTTCACAA
Roseiflexus sp. RS-1 RoseRS_1698 -48 5.3 TTGTTCAGTATTTCACAA
Position: -42
Score: 3.9
Sequence: TCGTGATGTGTTGCACGG
Locus tag: Rcas_2846
Rcas_2846 -42 3.9 TCGTGATGTGTTGCACGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)
Herpetosiphon aurantiacus ATCC 23779 Haur_0429 -117 4.1 TTGTGAAGTTTTTCCTTA
Roseiflexus castenholzii DSM 13941 Rcas_2846 -42 3.9 TCGTGATGTGTTGCACGG
Roseiflexus sp. RS-1 RoseRS_2496 -42 5.3 TCGTGATGTGTTTCACGA
Position: -127
Score: 4.1
Sequence: TCGTGCAACTTTTCACGT
Locus tag: Rcas_3558
Rcas_3558 -127 4.1 TCGTGCAACTTTTCACGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Roseiflexus castenholzii DSM 13941 Rcas_3558 -127 4.1 TCGTGCAACTTTTCACGT
Roseiflexus sp. RS-1 RoseRS_2263 -131 4.1 TCGTGCAACTTTTCACGT
Position: -69
Score: 4.7
Sequence: TTGTGATGTTTGTCACCT
Locus tag: Rcas_3744
Rcas_3744 -69 4.7 TTGTGATGTTTGTCACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bchY
Ortholog function: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
Roseiflexus castenholzii DSM 13941 Rcas_3744 -69 4.7 TTGTGATGTTTGTCACCT
Roseiflexus sp. RS-1 RoseRS_3257 -56 4.5 TTGTGAATGTTATCACCT
Position: -79
Score: 5.3
Sequence: TTGTGATTATTATTACAA
Position: -53
Score: 5.2
Sequence: TCGTGAAGCATATCACGA
Locus tag: Rcas_3898
Rcas_3898 -79 5.3 TTGTGATTATTATTACAA
-53 5.2 TCGTGAAGCATATCACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cagg_2669
Ortholog function: Cytochrome c family protein
Chloroflexus aggregans DSM 9485 Cagg_2669 -28 5 TCGTGATGTTTGTCACGA
Chloroflexus aggregans DSM 9485 Cagg_2026 -145 4.5 GTGACACATATTTCACAA
-56 4.7 AAGTGAATAATATCACTA
Roseiflexus castenholzii DSM 13941 Rcas_3898 -79 5.3 TTGTGATTATTATTACAA
-53 5.2 TCGTGAAGCATATCACGA
Roseiflexus sp. RS-1 RoseRS_0596 -73 5 TTGTGATTATTATTGCAA
-51 5.1 TCGTGAAGTGTATCACGA
Position: -44
Score: 4.3
Sequence: TTGTGCAAGATTTCACGG
Locus tag: Rcas_3936
Rcas_3936 -44 4.3 TTGTGCAAGATTTCACGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cagg_1949
Ortholog function: GCN5-related N-acetyltransferase
Chloroflexus aggregans DSM 9485 Cagg_1949 -68 5.1 ATGTGGTATATTTCACAT
Chloroflexus sp. Y-400-fl Chy400_1583 -63 4.8 ATGTGGTATATTTCACAC
Roseiflexus castenholzii DSM 13941 Rcas_3936 -44 4.3 TTGTGCAAGATTTCACGG
Roseiflexus sp. RS-1 RoseRS_2002 -40 4.6 TTGTGCAAGATTTCACGT
Position: -115
Score: 3.9
Sequence: CTGTTCCTTTCATCACAA
Locus tag: Rcas_4255
Rcas_4255 -115 3.9 CTGTTCCTTTCATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fpr
Ortholog function: Ferredoxin--NADP(+) reductase (EC 1.18.1.2)
Chloroflexus aggregans DSM 9485 Cagg_2469 -56 5.2 CTGTGCTGTATATCACAA
Chloroflexus sp. Y-400-fl Chy400_1671 -61 4.5 CTGTGCTGTAAATCACAA
Roseiflexus castenholzii DSM 13941 Rcas_4255 -115 3.9 CTGTTCCTTTCATCACAA
Roseiflexus sp. RS-1 RoseRS_0005 -106 3.8 CTGTTCCATCCATCACAA
Position: -113
Score: 4.7
Sequence: TTGTGAAGTTTGACACAA
Locus tag: Rcas_4304
Rcas_4304 -113 4.7 TTGTGAAGTTTGACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ctaB
Ortholog function: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-)
Chloroflexus sp. Y-400-fl Chy400_0033 -34 4.1 TCGTGAAAGAATCCACGA
Roseiflexus castenholzii DSM 13941 Rcas_4304 -113 4.7 TTGTGAAGTTTGACACAA
Roseiflexus sp. RS-1 RoseRS_0224 -116 4.7 TTGTGAAGTTTGACACAA