Propagation of Rex regulog to Roseiflexus castenholzii DSM 13941

Reference regulog properties
Source regulog:	Rex - Chloroflexia
Regulator type:	Transcription factor
Regulator family:	Rex
Regulation mode:	repressor
Biological process:	Energy metabolism
Effector:	NADH
Phylum:	Chloroflexi
Propagated regulon:
Target genome	Roseiflexus castenholzii DSM 13941
Orthologous TF(s)	Rcas_1392
Regulated genes	12

Built upon 49 sites [see more]

Predicted regulatory interactions in *Roseiflexus castenholzii DSM 13941*
	Locus tag	Position	Score	Sequence
Position: -36 Score: 4.4 Sequence: TTGTGAAAGTGTTCTCAA Locus tag: Rcas_1271
	Rcas_1271	-36	4.4	TTGTGAAAGTGTTCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpB
Ortholog function: ATP synthase A chain (EC 3.6.3.14)
Chloroflexus aggregans DSM 9485	Cagg_0991	-105	4.3	TTGTGAAAGACTGAACAA
Chloroflexus sp. Y-400-fl	Chy400_3293	-109	4	TTGTGAAAGATCGAACAA
Roseiflexus castenholzii DSM 13941	Rcas_1271	-36	4.4	TTGTGAAAGTGTTCTCAA
Roseiflexus sp. RS-1	RoseRS_0518	-44	4.4	TTGTGAAAGTGTTCTCAA

Position: -109 Score: 4.3 Sequence: TAGTGCTACACTTCACAT Locus tag: Rcas_1392
	Rcas_1392	-109	4.3	TAGTGCTACACTTCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rex
Ortholog function: Redox-sensitive transcriptional regulator Rex
Chloroflexus aggregans DSM 9485	Cagg_0157	-47	4.7	TTGTGCTACACTTCACAT
Chloroflexus sp. Y-400-fl	Chy400_3940	-55	4.7	TTGTGCTACACTTCACAT
Herpetosiphon aurantiacus ATCC 23779	Haur_4427	-121	4.3	TTGCACTATACTTCACAA
Roseiflexus castenholzii DSM 13941	Rcas_1392	-109	4.3	TAGTGCTACACTTCACAT
Roseiflexus sp. RS-1	RoseRS_4103	-157	4.3	TAGTGCTACACTTCACAT

Position: -64 Score: 5 Sequence: TTGTGATATACTCAACAA Locus tag: Rcas_2088
	Rcas_2088	-64	5	TTGTGATATACTCAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoA
Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Chloroflexus aggregans DSM 9485	Cagg_1631	-55	5.2	TTGTGATATACTTCTCAT
Chloroflexus sp. Y-400-fl	Chy400_2142	-54	5.2	TTGTGATATACTTCTCAT
Herpetosiphon aurantiacus ATCC 23779	Haur_4980	-117	5.1	CTGTGATATACTTCGCAA
Roseiflexus castenholzii DSM 13941	Rcas_2088	-64	5	TTGTGATATACTCAACAA

Position: -48 Score: 5.8 Sequence: TTGTTATGTATTTCACAA Locus tag: Rcas_2323
	Rcas_2323	-48	5.8	TTGTTATGTATTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hepT
Ortholog function: Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)
Chloroflexus aggregans DSM 9485	Cagg_0899	-125	5.4	TTGTGGCGAATATCACAA
Chloroflexus sp. Y-400-fl	Chy400_4040	-123	5.7	TTGTGGTGAATATCACAA
Herpetosiphon aurantiacus ATCC 23779	Haur_2345	-44	4.6	ACGCGATAACTTTCACAA
Roseiflexus castenholzii DSM 13941	Rcas_2323	-48	5.8	TTGTTATGTATTTCACAA
Roseiflexus sp. RS-1	RoseRS_1698	-48	5.3	TTGTTCAGTATTTCACAA

Position: -42 Score: 3.9 Sequence: TCGTGATGTGTTGCACGG Locus tag: Rcas_2846
	Rcas_2846	-42	3.9	TCGTGATGTGTTGCACGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)
Herpetosiphon aurantiacus ATCC 23779	Haur_0429	-117	4.1	TTGTGAAGTTTTTCCTTA
Roseiflexus castenholzii DSM 13941	Rcas_2846	-42	3.9	TCGTGATGTGTTGCACGG
Roseiflexus sp. RS-1	RoseRS_2496	-42	5.3	TCGTGATGTGTTTCACGA

Position: -127 Score: 4.1 Sequence: TCGTGCAACTTTTCACGT Locus tag: Rcas_3558
	Rcas_3558	-127	4.1	TCGTGCAACTTTTCACGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Roseiflexus castenholzii DSM 13941	Rcas_3558	-127	4.1	TCGTGCAACTTTTCACGT
Roseiflexus sp. RS-1	RoseRS_2263	-131	4.1	TCGTGCAACTTTTCACGT

Position: -69 Score: 4.7 Sequence: TTGTGATGTTTGTCACCT Locus tag: Rcas_3744
	Rcas_3744	-69	4.7	TTGTGATGTTTGTCACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bchY
Ortholog function: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
Roseiflexus castenholzii DSM 13941	Rcas_3744	-69	4.7	TTGTGATGTTTGTCACCT
Roseiflexus sp. RS-1	RoseRS_3257	-56	4.5	TTGTGAATGTTATCACCT

Position: -79 Score: 5.3 Sequence: TTGTGATTATTATTACAA Position: -53 Score: 5.2 Sequence: TCGTGAAGCATATCACGA Locus tag: Rcas_3898
	Rcas_3898	-79	5.3	TTGTGATTATTATTACAA
		-53	5.2	TCGTGAAGCATATCACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cagg_2669
Ortholog function: Cytochrome c family protein
Chloroflexus aggregans DSM 9485	Cagg_2669	-28	5	TCGTGATGTTTGTCACGA
Chloroflexus aggregans DSM 9485	Cagg_2026	-145	4.5	GTGACACATATTTCACAA
		-56	4.7	AAGTGAATAATATCACTA
Roseiflexus castenholzii DSM 13941	Rcas_3898	-79	5.3	TTGTGATTATTATTACAA
		-53	5.2	TCGTGAAGCATATCACGA
Roseiflexus sp. RS-1	RoseRS_0596	-73	5	TTGTGATTATTATTGCAA
		-51	5.1	TCGTGAAGTGTATCACGA

Position: -44 Score: 4.3 Sequence: TTGTGCAAGATTTCACGG Locus tag: Rcas_3936
	Rcas_3936	-44	4.3	TTGTGCAAGATTTCACGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cagg_1949
Ortholog function: GCN5-related N-acetyltransferase
Chloroflexus aggregans DSM 9485	Cagg_1949	-68	5.1	ATGTGGTATATTTCACAT
Chloroflexus sp. Y-400-fl	Chy400_1583	-63	4.8	ATGTGGTATATTTCACAC
Roseiflexus castenholzii DSM 13941	Rcas_3936	-44	4.3	TTGTGCAAGATTTCACGG
Roseiflexus sp. RS-1	RoseRS_2002	-40	4.6	TTGTGCAAGATTTCACGT

Position: -115 Score: 3.9 Sequence: CTGTTCCTTTCATCACAA Locus tag: Rcas_4255
	Rcas_4255	-115	3.9	CTGTTCCTTTCATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fpr
Ortholog function: Ferredoxin--NADP(+) reductase (EC 1.18.1.2)
Chloroflexus aggregans DSM 9485	Cagg_2469	-56	5.2	CTGTGCTGTATATCACAA
Chloroflexus sp. Y-400-fl	Chy400_1671	-61	4.5	CTGTGCTGTAAATCACAA
Roseiflexus castenholzii DSM 13941	Rcas_4255	-115	3.9	CTGTTCCTTTCATCACAA
Roseiflexus sp. RS-1	RoseRS_0005	-106	3.8	CTGTTCCATCCATCACAA

Position: -113 Score: 4.7 Sequence: TTGTGAAGTTTGACACAA Locus tag: Rcas_4304
	Rcas_4304	-113	4.7	TTGTGAAGTTTGACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ctaB
Ortholog function: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-)
Chloroflexus sp. Y-400-fl	Chy400_0033	-34	4.1	TCGTGAAAGAATCCACGA
Roseiflexus castenholzii DSM 13941	Rcas_4304	-113	4.7	TTGTGAAGTTTGACACAA
Roseiflexus sp. RS-1	RoseRS_0224	-116	4.7	TTGTGAAGTTTGACACAA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Rex regulog to Roseiflexus castenholzii DSM 13941

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --