Regulog Rex - Chloroflexia

Properties
Regulator type:	Transcription factor
Regulator family:	Rex
Regulation mode:	repressor
Biological process:	Energy metabolism
Effector:	NADH
Phylum:	Chloroflexi
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 49 sites [see more]

Member of regulog collections

By trascription factor - Rex
By taxonomy - Chloroflexi
By TF family - Rex
By effector - NADH
By pathway - Energy metabolism

Statistics of regulated genes
Genome	Genes	Operons
Chloroflexus aggregans DSM 9485	30	11
Chloroflexus sp. Y-400-fl	29	10
Herpetosiphon aurantiacus ATCC 23779	15	4
Roseiflexus castenholzii DSM 13941	28	11
Roseiflexus sp. RS-1	23	10

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes						Function

CRON 1.
nuoA	* Chloroflexus aggregans DSM 9485 Site: position = -55 score = 5.1805 sequence = TTGTGATATACTTCTCAT Gene: Cagg_1631: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	* Chloroflexus sp. Y-400-fl Site: position = -54 score = 5.1805 sequence = TTGTGATATACTTCTCAT Gene: Chy400_2142: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -117 score = 5.10844 sequence = CTGTGATATACTTCGCAA Gene: Haur_4980: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	* Roseiflexus castenholzii DSM 13941 Site: position = -64 score = 4.95774 sequence = TTGTGATATACTCAACAA Gene: Rcas_2088: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_2989: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
nuoB	Chloroflexus aggregans DSM 9485 Gene: Cagg_1630: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	Chloroflexus sp. Y-400-fl Gene: Chy400_2141: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4981: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2089: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_2990: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
nuoC	Chloroflexus aggregans DSM 9485 Gene: Cagg_1629: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	Chloroflexus sp. Y-400-fl Gene: Chy400_2140: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4982: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2090: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_2991: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
nuoD	Chloroflexus aggregans DSM 9485 Gene: Cagg_1628: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	Chloroflexus sp. Y-400-fl Gene: Chy400_2139: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4983: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2091: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_2992: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
nuoI	Chloroflexus aggregans DSM 9485 Gene: Cagg_1627: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	Chloroflexus sp. Y-400-fl Gene: Chy400_2138: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4984: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2092: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_2993: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
nuoH	Chloroflexus aggregans DSM 9485 Gene: Cagg_1626: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	Chloroflexus sp. Y-400-fl Gene: Chy400_2137: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4985: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2093: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_2994: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
nuoJ	Chloroflexus aggregans DSM 9485 Gene: Cagg_1625: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	Chloroflexus sp. Y-400-fl Gene: Chy400_2136: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4986: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2094: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_2995: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
nuoK	Chloroflexus aggregans DSM 9485 Gene: Cagg_1624: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	Chloroflexus sp. Y-400-fl Gene: Chy400_2135: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4987: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2095: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_2996: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
nuoL	Chloroflexus aggregans DSM 9485 Gene: Cagg_1623: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	Chloroflexus sp. Y-400-fl Gene: Chy400_2134: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4988: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2096: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_2997: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
nuoM1	Chloroflexus aggregans DSM 9485 Gene: Cagg_1622: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Chloroflexus sp. Y-400-fl Gene: Chy400_2133: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4989: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2097: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_2998: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
nuoM2	Chloroflexus aggregans DSM 9485 Gene: Cagg_1621: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Chloroflexus sp. Y-400-fl Gene: Chy400_2132: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4990: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2098: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_2999: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
nuoN	Chloroflexus aggregans DSM 9485 Gene: Cagg_1620: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	Chloroflexus sp. Y-400-fl Gene: Chy400_2131: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4991: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2099: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_3000: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)

CRON 2.
cyoA	Chloroflexus aggregans DSM 9485	Chloroflexus sp. Y-400-fl	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0104: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)	* Roseiflexus castenholzii DSM 13941 Site: position = -127 score = 4.08886 sequence = TCGTGCAACTTTTCACGT Gene: Rcas_3558: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)	* Roseiflexus sp. RS-1 Site: position = -131 score = 4.08886 sequence = TCGTGCAACTTTTCACGT Gene: RoseRS_2263: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)	Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
cyoB	Chloroflexus aggregans DSM 9485	Chloroflexus sp. Y-400-fl	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0105: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_3557: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)	Roseiflexus sp. RS-1 Gene: RoseRS_2264: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)	Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
cyoC	Chloroflexus aggregans DSM 9485	Chloroflexus sp. Y-400-fl	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0106: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_3556: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Roseiflexus sp. RS-1 Gene: RoseRS_2265: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
cyoD	Chloroflexus aggregans DSM 9485	Chloroflexus sp. Y-400-fl	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0107: caa(3)-type oxidase, subunit IV	Roseiflexus castenholzii DSM 13941 Gene: Rcas_3555: caa(3)-type oxidase, subunit IV	Roseiflexus sp. RS-1 Gene: RoseRS_2266: caa(3)-type oxidase, subunit IV	caa(3)-type oxidase, subunit IV
cyoE	Chloroflexus aggregans DSM 9485	Chloroflexus sp. Y-400-fl	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0108: CtaG protein	Roseiflexus castenholzii DSM 13941 Gene: Rcas_3554: CtaG protein	Roseiflexus sp. RS-1 Gene: RoseRS_2267: CtaG protein	CtaG protein

CRON 3.
pckA	Chloroflexus aggregans DSM 9485 Gene: Cagg_3060: Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)	Chloroflexus sp. Y-400-fl Gene: Chy400_2513: Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -117 score = 4.14204 sequence = TTGTGAAGTTTTTCCTTA Gene: Haur_0429: Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)	* Roseiflexus castenholzii DSM 13941 Site: position = -42 score = 3.90304 sequence = TCGTGATGTGTTGCACGG Gene: Rcas_2846: Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)	* Roseiflexus sp. RS-1 Site: position = -42 score = 5.26345 sequence = TCGTGATGTGTTTCACGA Gene: RoseRS_2496: Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)	Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)

CRON 4.
Chy400_0034	Chloroflexus aggregans DSM 9485	* Chloroflexus sp. Y-400-fl Site: position = -34 score = 4.06988 sequence = TCGTGAAAGAATCCACGA Gene: Chy400_0034: hypothetical protein	Herpetosiphon aurantiacus ATCC 23779	Roseiflexus castenholzii DSM 13941	Roseiflexus sp. RS-1	hypothetical protein
ctaB	Chloroflexus aggregans DSM 9485	Chloroflexus sp. Y-400-fl Gene: Chy400_0033: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_3708: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-)	* Roseiflexus castenholzii DSM 13941 Site: position = -113 score = 4.73822 sequence = TTGTGAAGTTTGACACAA Gene: Rcas_4304: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-)	* Roseiflexus sp. RS-1 Site: position = -116 score = 4.73822 sequence = TTGTGAAGTTTGACACAA Gene: RoseRS_0224: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-)	Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-)

CRON 5.
rex	* Chloroflexus aggregans DSM 9485 Site: position = -47 score = 4.70205 sequence = TTGTGCTACACTTCACAT Gene: Cagg_0157: Redox-sensitive transcriptional regulator Rex	* Chloroflexus sp. Y-400-fl Site: position = -55 score = 4.70205 sequence = TTGTGCTACACTTCACAT Gene: Chy400_3940: Redox-sensitive transcriptional regulator Rex	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -121 score = 4.30843 sequence = TTGCACTATACTTCACAA Gene: Haur_4427: Redox-sensitive transcriptional regulator Rex	* Roseiflexus castenholzii DSM 13941 Site: position = -109 score = 4.26405 sequence = TAGTGCTACACTTCACAT Gene: Rcas_1392: Redox-sensitive transcriptional regulator Rex	* Roseiflexus sp. RS-1 Site: position = -157 score = 4.26405 sequence = TAGTGCTACACTTCACAT Gene: RoseRS_4103: Redox-sensitive transcriptional regulator Rex	Redox-sensitive transcriptional regulator Rex

CRON 6.
hepT	* Chloroflexus aggregans DSM 9485 Site: position = -125 score = 5.40922 sequence = TTGTGGCGAATATCACAA Gene: Cagg_0899: Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)	* Chloroflexus sp. Y-400-fl Site: position = -123 score = 5.69737 sequence = TTGTGGTGAATATCACAA Gene: Chy400_4040: Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -44 score = 4.61054 sequence = ACGCGATAACTTTCACAA Gene: Haur_2345: Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)	* Roseiflexus castenholzii DSM 13941 Site: position = -48 score = 5.81388 sequence = TTGTTATGTATTTCACAA Gene: Rcas_2323: Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)	* Roseiflexus sp. RS-1 Site: position = -48 score = 5.25016 sequence = TTGTTCAGTATTTCACAA Gene: RoseRS_1698: Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)	Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)

CRON 7.
atpB	* Chloroflexus aggregans DSM 9485 Site: position = -105 score = 4.29892 sequence = TTGTGAAAGACTGAACAA Gene: Cagg_0991: ATP synthase A chain (EC 3.6.3.14)	* Chloroflexus sp. Y-400-fl Site: position = -109 score = 3.95463 sequence = TTGTGAAAGATCGAACAA Gene: Chy400_3293: ATP synthase A chain (EC 3.6.3.14)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4066: ATP synthase A chain (EC 3.6.3.14)	* Roseiflexus castenholzii DSM 13941 Site: position = -36 score = 4.41404 sequence = TTGTGAAAGTGTTCTCAA Gene: Rcas_1271: ATP synthase A chain (EC 3.6.3.14)	* Roseiflexus sp. RS-1 Site: position = -44 score = 4.41404 sequence = TTGTGAAAGTGTTCTCAA Gene: RoseRS_0518: ATP synthase A chain (EC 3.6.3.14)	ATP synthase A chain (EC 3.6.3.14)
atpE	Chloroflexus aggregans DSM 9485 Gene: Cagg_0990: ATP synthase C chain (EC 3.6.3.14)	Chloroflexus sp. Y-400-fl Gene: Chy400_3292: ATP synthase C chain (EC 3.6.3.14)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4067: ATP synthase C chain (EC 3.6.3.14)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_1270: ATP synthase C chain (EC 3.6.3.14)	Roseiflexus sp. RS-1 Gene: RoseRS_0517: ATP synthase C chain (EC 3.6.3.14)	ATP synthase C chain (EC 3.6.3.14)
atpF	Chloroflexus aggregans DSM 9485 Gene: Cagg_0989: ATP synthase B chain (EC 3.6.3.14)	Chloroflexus sp. Y-400-fl Gene: Chy400_3291: ATP synthase B chain (EC 3.6.3.14)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4068: ATP synthase B chain (EC 3.6.3.14)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_1269: ATP synthase B chain (EC 3.6.3.14)	Roseiflexus sp. RS-1 Gene: RoseRS_0516: ATP synthase B chain (EC 3.6.3.14)	ATP synthase B chain (EC 3.6.3.14)
atpH	Chloroflexus aggregans DSM 9485 Gene: Cagg_0988: ATP synthase delta chain (EC 3.6.3.14)	Chloroflexus sp. Y-400-fl Gene: Chy400_3290: ATP synthase delta chain (EC 3.6.3.14)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4069: ATP synthase delta chain (EC 3.6.3.14)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_1268: ATP synthase delta chain (EC 3.6.3.14)	Roseiflexus sp. RS-1 Gene: RoseRS_0515: ATP synthase delta chain (EC 3.6.3.14)	ATP synthase delta chain (EC 3.6.3.14)
atpA	Chloroflexus aggregans DSM 9485 Gene: Cagg_0987: ATP synthase alpha chain (EC 3.6.3.14)	Chloroflexus sp. Y-400-fl Gene: Chy400_3289: ATP synthase alpha chain (EC 3.6.3.14)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4070: ATP synthase alpha chain (EC 3.6.3.14)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_1267: ATP synthase alpha chain (EC 3.6.3.14)	Roseiflexus sp. RS-1 Gene: RoseRS_0514: ATP synthase alpha chain (EC 3.6.3.14)	ATP synthase alpha chain (EC 3.6.3.14)
atpG	Chloroflexus aggregans DSM 9485 Gene: Cagg_0986: ATP synthase gamma chain (EC 3.6.3.14)	Chloroflexus sp. Y-400-fl Gene: Chy400_3288: ATP synthase gamma chain (EC 3.6.3.14)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4071: ATP synthase gamma chain (EC 3.6.3.14)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_1266: ATP synthase gamma chain (EC 3.6.3.14)	Roseiflexus sp. RS-1 Gene: RoseRS_0513: ATP synthase gamma chain (EC 3.6.3.14)	ATP synthase gamma chain (EC 3.6.3.14)
atpD	Chloroflexus aggregans DSM 9485 Gene: Cagg_0985: ATP synthase beta chain (EC 3.6.3.14)	Chloroflexus sp. Y-400-fl Gene: Chy400_3287: ATP synthase beta chain (EC 3.6.3.14)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4072: ATP synthase beta chain (EC 3.6.3.14)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_1265: ATP synthase beta chain (EC 3.6.3.14)	Roseiflexus sp. RS-1 Gene: RoseRS_0512: ATP synthase beta chain (EC 3.6.3.14)	ATP synthase beta chain (EC 3.6.3.14)
atpC	Chloroflexus aggregans DSM 9485 Gene: Cagg_0984: ATP synthase epsilon chain (EC 3.6.3.14)	Chloroflexus sp. Y-400-fl Gene: Chy400_3286: ATP synthase epsilon chain (EC 3.6.3.14)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_4073: ATP synthase epsilon chain (EC 3.6.3.14)	Roseiflexus castenholzii DSM 13941 Gene: Rcas_1264: ATP synthase epsilon chain (EC 3.6.3.14)	Roseiflexus sp. RS-1 Gene: RoseRS_0511: ATP synthase epsilon chain (EC 3.6.3.14)	ATP synthase epsilon chain (EC 3.6.3.14)

CRON 8.
Cagg_1949	* Chloroflexus aggregans DSM 9485 Site: position = -68 score = 5.05023 sequence = ATGTGGTATATTTCACAT Gene: Cagg_1949: GCN5-related N-acetyltransferase	* Chloroflexus sp. Y-400-fl Site: position = -63 score = 4.7566 sequence = ATGTGGTATATTTCACAC Gene: Chy400_1583: GCN5-related N-acetyltransferase	Herpetosiphon aurantiacus ATCC 23779	* Roseiflexus castenholzii DSM 13941 Site: position = -44 score = 4.29114 sequence = TTGTGCAAGATTTCACGG Gene: Rcas_3936: GCN5-related N-acetyltransferase	* Roseiflexus sp. RS-1 Site: position = -40 score = 4.58477 sequence = TTGTGCAAGATTTCACGT Gene: RoseRS_2002: GCN5-related N-acetyltransferase	GCN5-related N-acetyltransferase

CRON 9.
Cagg_2669	2 Chloroflexus aggregans DSM 9485* Site: position = -28 score = 5.04173 sequence = TCGTGATGTTTGTCACGA Gene: Cagg_2669: Cytochrome c family protein Site: position = -56 score = 4.74875 sequence = AAGTGAATAATATCACTA Site: position = -145 score = 4.46651 sequence = GTGACACATATTTCACAA Gene: Cagg_2026: Cytochrome c family protein	Chloroflexus sp. Y-400-fl	Herpetosiphon aurantiacus ATCC 23779	* Roseiflexus castenholzii DSM 13941 Site: position = -53 score = 5.16928 sequence = TCGTGAAGCATATCACGA Site: position = -79 score = 5.32124 sequence = TTGTGATTATTATTACAA Gene: Rcas_3898: Cytochrome c family protein	* Roseiflexus sp. RS-1 Site: position = -51 score = 5.09756 sequence = TCGTGAAGTGTATCACGA Site: position = -73 score = 4.96714 sequence = TTGTGATTATTATTGCAA Gene: RoseRS_0596: Cytochrome c family protein	Cytochrome c family protein
Cagg_2670	2 Chloroflexus aggregans DSM 9485 Gene: Cagg_2670: hypothetical protein Gene: Cagg_2025: hypothetical protein	Chloroflexus sp. Y-400-fl	Herpetosiphon aurantiacus ATCC 23779	Roseiflexus castenholzii DSM 13941 Gene: Rcas_3899: hypothetical protein	Roseiflexus sp. RS-1 Gene: RoseRS_0597: hypothetical protein	hypothetical protein

CRON 10.
acs	* Chloroflexus aggregans DSM 9485 Site: position = -56 score = 5.27843 sequence = TTGTTATATCTATCACAA Gene: Cagg_3394: Acetyl-coenzyme A synthetase (EC 6.2.1.1)	* Chloroflexus sp. Y-400-fl Site: position = -54 score = 5.4272 sequence = TTGTTATCTATATCACAA Gene: Chy400_0662: Acetyl-coenzyme A synthetase (EC 6.2.1.1)	Herpetosiphon aurantiacus ATCC 23779	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2930: Acetyl-coenzyme A synthetase (EC 6.2.1.1)	Roseiflexus sp. RS-1 Gene: RoseRS_3202: Acetyl-coenzyme A synthetase (EC 6.2.1.1)	Acetyl-coenzyme A synthetase (EC 6.2.1.1)

CRON 11.
ndh	* Chloroflexus aggregans DSM 9485 Site: position = -33 score = 5.29564 sequence = TTGTGAACAATTTCACCA Gene: Cagg_0500: NADH dehydrogenase (EC 1.6.99.3)	* Chloroflexus sp. Y-400-fl Site: position = -33 score = 5.29108 sequence = TTGTGAATGATTTCACTA Gene: Chy400_3620: NADH dehydrogenase (EC 1.6.99.3)	Herpetosiphon aurantiacus ATCC 23779	Roseiflexus castenholzii DSM 13941 Gene: Rcas_2276: NADH dehydrogenase (EC 1.6.99.3)	Roseiflexus sp. RS-1	NADH dehydrogenase (EC 1.6.99.3)

CRON 12.
nuoM3	* Chloroflexus aggregans DSM 9485 Site: position = -295 score = 4.85908 sequence = ATGTGAGGTATGTCACAA Gene: Cagg_0775: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	* Chloroflexus sp. Y-400-fl Site: position = -250 score = 5.23418 sequence = ACGTGATATTTATCACAA Gene: Chy400_3880: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Herpetosiphon aurantiacus ATCC 23779	Roseiflexus castenholzii DSM 13941 Gene: Rcas_3383: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Roseiflexus sp. RS-1 Gene: RoseRS_2231: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)

CRON 13.
fpr	* Chloroflexus aggregans DSM 9485 Site: position = -56 score = 5.19428 sequence = CTGTGCTGTATATCACAA Gene: Cagg_2469: Ferredoxin--NADP(+) reductase (EC 1.18.1.2)	* Chloroflexus sp. Y-400-fl Site: position = -61 score = 4.54656 sequence = CTGTGCTGTAAATCACAA Gene: Chy400_1671: Ferredoxin--NADP(+) reductase (EC 1.18.1.2)	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_3267: Ferredoxin--NADP(+) reductase (EC 1.18.1.2)	* Roseiflexus castenholzii DSM 13941 Site: position = -115 score = 3.92477 sequence = CTGTTCCTTTCATCACAA Gene: Rcas_4255: Ferredoxin--NADP(+) reductase (EC 1.18.1.2)	* Roseiflexus sp. RS-1 Site: position = -106 score = 3.83391 sequence = CTGTTCCATCCATCACAA Gene: RoseRS_0005: Ferredoxin--NADP(+) reductase (EC 1.18.1.2)	Ferredoxin--NADP(+) reductase (EC 1.18.1.2)

CRON 14.
bchY	Chloroflexus aggregans DSM 9485 Gene: Cagg_0850: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)	Chloroflexus sp. Y-400-fl Gene: Chy400_4108: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)	Herpetosiphon aurantiacus ATCC 23779	* Roseiflexus castenholzii DSM 13941 Site: position = -69 score = 4.71908 sequence = TTGTGATGTTTGTCACCT Gene: Rcas_3744: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)	* Roseiflexus sp. RS-1 Site: position = -56 score = 4.4705 sequence = TTGTGAATGTTATCACCT Gene: RoseRS_3257: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)	Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
bchZ	Chloroflexus aggregans DSM 9485 Gene: Cagg_0851: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)	Chloroflexus sp. Y-400-fl Gene: Chy400_4109: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)	Herpetosiphon aurantiacus ATCC 23779	Roseiflexus castenholzii DSM 13941 Gene: Rcas_3743: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)	Roseiflexus sp. RS-1 Gene: RoseRS_3256: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)	Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Rex - Chloroflexia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --