Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Rex in Roseiflexus castenholzii DSM 13941

Properties
Regulator type: Transcription factor
TF locus tag: Rcas_1392
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Regulog: Rex - Chloroflexia
Statistics of regulated genes:
- Genes 28
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 49 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -127
Score: 4.1
Sequence: TCGTGCAACTTTTCACGT
Locus tag: Rcas_3558
Name: cyoA
Funciton: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: Rcas_3557
Name: cyoB
Funciton: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Rcas_3558
cyoA
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Rcas_3557
cyoB
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Position: -115
Score: 3.9
Sequence: CTGTTCCTTTCATCACAA
Locus tag: Rcas_4255
Name: fpr
Funciton: Ferredoxin--NADP(+) reductase (EC 1.18.1.2)
Rcas_4255
fpr
Ferredoxin--NADP(+) reductase (EC 1.18.1.2)
Position: -79
Score: 5.3
Sequence: TTGTGATTATTATTACAA
Position: -53
Score: 5.2
Sequence: TCGTGAAGCATATCACGA
Locus tag: Rcas_3898
Name: Cagg_2669
Funciton: Cytochrome c family protein
Locus tag: Rcas_3899
Name: Cagg_2670
Funciton: hypothetical protein
Rcas_3898
Cagg_2669
Cytochrome c family protein
Rcas_3899
Cagg_2670
hypothetical protein
Position: -44
Score: 4.3
Sequence: TTGTGCAAGATTTCACGG
Locus tag: Rcas_3936
Name: Cagg_1949
Funciton: GCN5-related N-acetyltransferase
Rcas_3936
Cagg_1949
GCN5-related N-acetyltransferase
Position: -36
Score: 4.4
Sequence: TTGTGAAAGTGTTCTCAA
Locus tag: Rcas_1271
Name: atpB
Funciton: ATP synthase A chain (EC 3.6.3.14)
Locus tag: Rcas_1270
Name: atpE
Funciton: ATP synthase C chain (EC 3.6.3.14)
Locus tag: Rcas_1269
Name: atpF
Funciton: ATP synthase B chain (EC 3.6.3.14)
Locus tag: Rcas_1268
Name: atpH
Funciton: ATP synthase delta chain (EC 3.6.3.14)
Locus tag: Rcas_1267
Name: atpA
Funciton: ATP synthase alpha chain (EC 3.6.3.14)
Locus tag: Rcas_1266
Name: atpG
Funciton: ATP synthase gamma chain (EC 3.6.3.14)
Locus tag: Rcas_1265
Name: atpD
Funciton: ATP synthase beta chain (EC 3.6.3.14)
Locus tag: Rcas_1264
Name: atpC
Funciton: ATP synthase epsilon chain (EC 3.6.3.14)
Rcas_1271
atpB
ATP synthase A chain (EC 3.6.3.14)
Rcas_1270
atpE
ATP synthase C chain (EC 3.6.3.14)
Rcas_1269
atpF
ATP synthase B chain (EC 3.6.3.14)
Rcas_1268
atpH
ATP synthase delta chain (EC 3.6.3.14)
Rcas_1267
atpA
ATP synthase alpha chain (EC 3.6.3.14)
Rcas_1266
atpG
ATP synthase gamma chain (EC 3.6.3.14)
Rcas_1265
atpD
ATP synthase beta chain (EC 3.6.3.14)
Rcas_1264
atpC
ATP synthase epsilon chain (EC 3.6.3.14)
Position: -48
Score: 5.8
Sequence: TTGTTATGTATTTCACAA
Locus tag: Rcas_2323
Name: hepT
Funciton: Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)
Rcas_2323
hepT
Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)
Position: -109
Score: 4.3
Sequence: TAGTGCTACACTTCACAT
Locus tag: Rcas_1392
Name: rex
Funciton: Redox-sensitive transcriptional regulator Rex
Rcas_1392
rex
Redox-sensitive transcriptional regulator Rex
Position: -64
Score: 5
Sequence: TTGTGATATACTCAACAA
Locus tag: Rcas_2088
Name: nuoA
Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: Rcas_2089
Name: nuoB
Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: Rcas_2090
Name: nuoC
Funciton: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
Locus tag: Rcas_2091
Name: nuoD
Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Locus tag: Rcas_2092
Name: nuoI
Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Locus tag: Rcas_2093
Name: nuoH
Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: Rcas_2094
Name: nuoJ
Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: Rcas_2095
Name: nuoK
Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Rcas_2088
nuoA
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Rcas_2089
nuoB
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Rcas_2090
nuoC
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
Rcas_2091
nuoD
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Rcas_2092
nuoI
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Rcas_2093
nuoH
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Rcas_2094
nuoJ
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Rcas_2095
nuoK
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Position: -42
Score: 3.9
Sequence: TCGTGATGTGTTGCACGG
Locus tag: Rcas_2846
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)
Rcas_2846
pckA
Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)
Position: -113
Score: 4.7
Sequence: TTGTGAAGTTTGACACAA
Locus tag: Rcas_4304
Name: ctaB
Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-)
Rcas_4304
ctaB
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-)
Position: -69
Score: 4.7
Sequence: TTGTGATGTTTGTCACCT
Locus tag: Rcas_3744
Name: bchY
Funciton: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
Locus tag: Rcas_3743
Name: bchZ
Funciton: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
Rcas_3744
bchY
Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
Rcas_3743
bchZ
Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
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