Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Zur2 regulog to Roseiflexus sp. RS-1

Reference regulog properties
Source regulog: Zur2 - Chloroflexia
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Zinc homeostasis
Effector: Zinc ion, (Zn2+)
Phylum: Chloroflexi
Propagated regulon:
Target genome Roseiflexus sp. RS-1
Orthologous TF(s) RoseRS_0593
Regulated genes 5
Built upon 10 sites [see more]
Predicted regulatory interactions in Roseiflexus sp. RS-1
Locus tag Position Score Sequence
Position: -33
Score: 6.5
Sequence: ACAATGATATTTACTATCATTTA
Locus tag: RoseRS_0592
RoseRS_0592 -33 6.5 ACAATGATATTTACTATCATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: COG0701
Ortholog function: predicted permease
Roseiflexus castenholzii DSM 13941 Rcas_3894 -33 7 TAAGTGATAGTAACTATCATTTA
Roseiflexus sp. RS-1 RoseRS_0592 -33 6.5 ACAATGATATTTACTATCATTTA
Position: -159
Score: 5.5
Sequence: CAAATGATAGACGAGATCATTTG
Locus tag: RoseRS_0598
RoseRS_0598 -159 5.5 CAAATGATAGACGAGATCATTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Rcas_3900
Ortholog function: Zinc finger domain, similar to cold shock proteins
Roseiflexus castenholzii DSM 13941 Rcas_3900 -157 5.6 CAACTGATAGATAAGATCATTTG
Roseiflexus sp. RS-1 RoseRS_0598 -159 5.5 CAAATGATAGACGAGATCATTTG
Position: -61
Score: 5.8
Sequence: AAAATGGTAGTTGCTATCATTGA
Locus tag: RoseRS_0845
RoseRS_0845 -61 5.8 AAAATGGTAGTTGCTATCATTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Rcas_3893
Ortholog function: hypothetical protein
Roseiflexus castenholzii DSM 13941 Rcas_3893 -63 5 TCGTTGAAAGTAACTATCATCTG
Roseiflexus sp. RS-1 RoseRS_0845 -61 5.8 AAAATGGTAGTTGCTATCATTGA
Position: -40
Score: 5.9
Sequence: GAACTGATATGATCTATCATTTG
Locus tag: RoseRS_3105
RoseRS_3105 -40 5.9 GAACTGATATGATCTATCATTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yciC
Ortholog function: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family
Roseiflexus castenholzii DSM 13941 Rcas_2945 -59 5.6 TCATTGATATACACTATCATCAA
Roseiflexus sp. RS-1 RoseRS_3105 -40 5.9 GAACTGATATGATCTATCATTTG
Position: -3
Score: 6
Sequence: TAAGTGATAGCATATATCACACT
Locus tag: RoseRS_3107
RoseRS_3107 -3 6 TAAGTGATAGCATATATCACACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fmdB
Ortholog function: putative regulatory protein, FmdB family
Roseiflexus castenholzii DSM 13941 Rcas_2948 -50 6.1 CAAGTGATAGCATATATCACAAA
Roseiflexus sp. RS-1 RoseRS_3107 -3 6 TAAGTGATAGCATATATCACACT