Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Zur2 regulog to Roseiflexus castenholzii DSM 13941

Reference regulog properties
Source regulog: Zur2 - Chloroflexia
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Zinc homeostasis
Effector: Zinc ion, (Zn2+)
Phylum: Chloroflexi
Propagated regulon:
Target genome Roseiflexus castenholzii DSM 13941
Orthologous TF(s) Rcas_3895
Regulated genes 5
Built upon 10 sites [see more]
Predicted regulatory interactions in Roseiflexus castenholzii DSM 13941
Locus tag Position Score Sequence
Position: -59
Score: 5.6
Sequence: TCATTGATATACACTATCATCAA
Locus tag: Rcas_2945
Rcas_2945 -59 5.6 TCATTGATATACACTATCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yciC
Ortholog function: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family
Roseiflexus castenholzii DSM 13941 Rcas_2945 -59 5.6 TCATTGATATACACTATCATCAA
Roseiflexus sp. RS-1 RoseRS_3105 -40 5.9 GAACTGATATGATCTATCATTTG
Position: -50
Score: 6.1
Sequence: CAAGTGATAGCATATATCACAAA
Locus tag: Rcas_2948
Rcas_2948 -50 6.1 CAAGTGATAGCATATATCACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fmdB
Ortholog function: putative regulatory protein, FmdB family
Roseiflexus castenholzii DSM 13941 Rcas_2948 -50 6.1 CAAGTGATAGCATATATCACAAA
Roseiflexus sp. RS-1 RoseRS_3107 -3 6 TAAGTGATAGCATATATCACACT
Position: -63
Score: 5
Sequence: TCGTTGAAAGTAACTATCATCTG
Locus tag: Rcas_3893
Rcas_3893 -63 5 TCGTTGAAAGTAACTATCATCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Rcas_3893
Ortholog function: hypothetical protein
Roseiflexus castenholzii DSM 13941 Rcas_3893 -63 5 TCGTTGAAAGTAACTATCATCTG
Roseiflexus sp. RS-1 RoseRS_0845 -61 5.8 AAAATGGTAGTTGCTATCATTGA
Position: -33
Score: 7
Sequence: TAAGTGATAGTAACTATCATTTA
Locus tag: Rcas_3894
Rcas_3894 -33 7 TAAGTGATAGTAACTATCATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: COG0701
Ortholog function: predicted permease
Roseiflexus castenholzii DSM 13941 Rcas_3894 -33 7 TAAGTGATAGTAACTATCATTTA
Roseiflexus sp. RS-1 RoseRS_0592 -33 6.5 ACAATGATATTTACTATCATTTA
Position: -157
Score: 5.6
Sequence: CAACTGATAGATAAGATCATTTG
Locus tag: Rcas_3900
Rcas_3900 -157 5.6 CAACTGATAGATAAGATCATTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Rcas_3900
Ortholog function: Zinc finger domain, similar to cold shock proteins
Roseiflexus castenholzii DSM 13941 Rcas_3900 -157 5.6 CAACTGATAGATAAGATCATTTG
Roseiflexus sp. RS-1 RoseRS_0598 -159 5.5 CAAATGATAGACGAGATCATTTG
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