Regulog Caur_1779 - Chloroflexia

Properties
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:
Biological process:	Energy metabolism
Effector:
Phylum:	Chloroflexi
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Chloroflexi
By TF family - LysR
By pathway - Energy metabolism

Statistics of regulated genes
Genome	Genes	Operons
Chloroflexus aggregans DSM 9485	4	2
Chloroflexus sp. Y-400-fl	3	2
Herpetosiphon aurantiacus ATCC 23779
Roseiflexus castenholzii DSM 13941
Roseiflexus sp. RS-1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes						Function

CRON 1.
nuoL	* Chloroflexus aggregans DSM 9485 Site: position = -120 score = 6.10301 sequence = TGTTCTTTTAAAACGAACA Gene: Cagg_2889: NADH-quinone oxidoreductase	* Chloroflexus sp. Y-400-fl Site: position = -106 score = 5.98987 sequence = CGTTCTTCTTAGTAGAACG Gene: Chy400_1925: NADH-quinone oxidoreductase	Herpetosiphon aurantiacus ATCC 23779	Roseiflexus castenholzii DSM 13941 Gene: Rcas_0566: NADH-quinone oxidoreductase	Roseiflexus sp. RS-1 Gene: RoseRS_3854: NADH-quinone oxidoreductase	NADH-quinone oxidoreductase
Cagg_2890	Chloroflexus aggregans DSM 9485 Gene: Cagg_2890: hypothetical protein	Chloroflexus sp. Y-400-fl	Herpetosiphon aurantiacus ATCC 23779	Roseiflexus castenholzii DSM 13941	Roseiflexus sp. RS-1	hypothetical protein
PF10070	Chloroflexus aggregans DSM 9485 Gene: Cagg_2891: Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase	Chloroflexus sp. Y-400-fl Gene: Chy400_1924: Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase	Herpetosiphon aurantiacus ATCC 23779	Roseiflexus castenholzii DSM 13941 Gene: Rcas_0567: Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase	Roseiflexus sp. RS-1 Gene: RoseRS_3853: Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase	Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase

CRON 2.
Caur_1779	* Chloroflexus aggregans DSM 9485 Site: position = -104 score = 6.10301 sequence = TGTTCGTTTTAAAAGAACA Gene: Cagg_2888: Putative transcriptional regulator of NADH dehydrogenase, LysR family	* Chloroflexus sp. Y-400-fl Site: position = -317 score = 5.98987 sequence = CGTTCTACTAAGAAGAACG Gene: Chy400_1926: Putative transcriptional regulator of NADH dehydrogenase, LysR family	Herpetosiphon aurantiacus ATCC 23779	Roseiflexus castenholzii DSM 13941	Roseiflexus sp. RS-1	Putative transcriptional regulator of NADH dehydrogenase, LysR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Caur_1779 - Chloroflexia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --