Regulog SufR - Chloroflexia

Properties
Regulator type:	Transcription factor
Regulator family:	[Other]
Regulation mode:	repressor
Biological process:	Iron-sulfur cluster biogenesis
Effector:	Iron-sulfur cluster redox state
Phylum:	Chloroflexi
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Chloroflexi
By TF family - [Other]
By effector - Iron-sulfur cluster redox state
By pathway - Iron-sulfur cluster biogenesis

Statistics of regulated genes
Genome	Genes	Operons
Chloroflexus aggregans DSM 9485	6	1
Chloroflexus sp. Y-400-fl	6	1
Herpetosiphon aurantiacus ATCC 23779	8	1
Roseiflexus castenholzii DSM 13941	6	1
Roseiflexus sp. RS-1	6	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes						Function

CRON 1.
sufR	* Chloroflexus aggregans DSM 9485 Site: position = -64 score = 6.76627 sequence = TTTTTATTGACAATAGCTC Gene: Cagg_0961: Iron-sulfur cluster regulator SufR	* Chloroflexus sp. Y-400-fl Site: position = -64 score = 6.87441 sequence = TTTTTATTGACAATAGACT Gene: Chy400_3749: Iron-sulfur cluster regulator SufR	* Herpetosiphon aurantiacus ATCC 23779 Site: position = -87 score = 5.79678 sequence = ATTTTATTGACAGAAAATG Gene: Haur_0414: Iron-sulfur cluster regulator SufR	* Roseiflexus castenholzii DSM 13941 Site: position = -62 score = 6.76627 sequence = TTTTTATTGACAATAGATA Gene: Rcas_0303: Iron-sulfur cluster regulator SufR	* Roseiflexus sp. RS-1 Site: position = -61 score = 6.87441 sequence = TTTTTATTGACAATAGCCG Gene: RoseRS_0707: Iron-sulfur cluster regulator SufR	Iron-sulfur cluster regulator SufR
sufC	Chloroflexus aggregans DSM 9485 Gene: Cagg_0960: Iron-sulfur cluster assembly ATPase protein SufC	Chloroflexus sp. Y-400-fl Gene: Chy400_3750: Iron-sulfur cluster assembly ATPase protein SufC	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0413: Iron-sulfur cluster assembly ATPase protein SufC	Roseiflexus castenholzii DSM 13941 Gene: Rcas_0304: Iron-sulfur cluster assembly ATPase protein SufC	Roseiflexus sp. RS-1 Gene: RoseRS_0708: Iron-sulfur cluster assembly ATPase protein SufC	Iron-sulfur cluster assembly ATPase protein SufC
sufD	Chloroflexus aggregans DSM 9485 Gene: Cagg_0959: Iron-sulfur cluster assembly protein SufD	Chloroflexus sp. Y-400-fl Gene: Chy400_3751: Iron-sulfur cluster assembly protein SufD	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0412: Iron-sulfur cluster assembly protein SufD	Roseiflexus castenholzii DSM 13941 Gene: Rcas_0305: Iron-sulfur cluster assembly protein SufD	Roseiflexus sp. RS-1 Gene: RoseRS_0709: Iron-sulfur cluster assembly protein SufD	Iron-sulfur cluster assembly protein SufD
Haur_0411	Chloroflexus aggregans DSM 9485	Chloroflexus sp. Y-400-fl	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0411: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit	Roseiflexus castenholzii DSM 13941	Roseiflexus sp. RS-1	NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit
Haur_0410	Chloroflexus aggregans DSM 9485	Chloroflexus sp. Y-400-fl	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0410: hypothetical protein	Roseiflexus castenholzii DSM 13941	Roseiflexus sp. RS-1	hypothetical protein
sufS	Chloroflexus aggregans DSM 9485 Gene: Cagg_0958: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Chloroflexus sp. Y-400-fl Gene: Chy400_3752: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0409: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Roseiflexus castenholzii DSM 13941 Gene: Rcas_0306: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Roseiflexus sp. RS-1 Gene: RoseRS_0710: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily	Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
sufE2	Chloroflexus aggregans DSM 9485 Gene: Cagg_0957: Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2	Chloroflexus sp. Y-400-fl Gene: Chy400_3753: Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0408: Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2	Roseiflexus castenholzii DSM 13941 Gene: Rcas_0307: Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2	Roseiflexus sp. RS-1 Gene: RoseRS_0711: Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2	Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2
sufB	Chloroflexus aggregans DSM 9485 Gene: Cagg_0956: Iron-sulfur cluster assembly protein SufB	Chloroflexus sp. Y-400-fl Gene: Chy400_3754: Iron-sulfur cluster assembly protein SufB	Herpetosiphon aurantiacus ATCC 23779 Gene: Haur_0407: Iron-sulfur cluster assembly protein SufB	Roseiflexus castenholzii DSM 13941 Gene: Rcas_0308: Iron-sulfur cluster assembly protein SufB	Roseiflexus sp. RS-1 Gene: RoseRS_0712: Iron-sulfur cluster assembly protein SufB	Iron-sulfur cluster assembly protein SufB

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SufR - Chloroflexia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --