Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Rex regulog to Chloroflexus aggregans DSM 9485

Reference regulog properties
Source regulog: Rex - Chloroflexia
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Chloroflexi
Propagated regulon:
Target genome Chloroflexus aggregans DSM 9485
Orthologous TF(s) Cagg_0157
Regulated genes 13
Built upon 49 sites [see more]
Predicted regulatory interactions in Chloroflexus aggregans DSM 9485
Locus tag Position Score Sequence
Position: -47
Score: 4.7
Sequence: TTGTGCTACACTTCACAT
Locus tag: Cagg_0157
Cagg_0157 -47 4.7 TTGTGCTACACTTCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rex
Ortholog function: Redox-sensitive transcriptional regulator Rex
Chloroflexus aggregans DSM 9485 Cagg_0157 -47 4.7 TTGTGCTACACTTCACAT
Chloroflexus sp. Y-400-fl Chy400_3940 -55 4.7 TTGTGCTACACTTCACAT
Herpetosiphon aurantiacus ATCC 23779 Haur_4427 -121 4.3 TTGCACTATACTTCACAA
Roseiflexus castenholzii DSM 13941 Rcas_1392 -109 4.3 TAGTGCTACACTTCACAT
Roseiflexus sp. RS-1 RoseRS_4103 -157 4.3 TAGTGCTACACTTCACAT
Position: -33
Score: 5.3
Sequence: TTGTGAACAATTTCACCA
Locus tag: Cagg_0500
Cagg_0500 -33 5.3 TTGTGAACAATTTCACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Chloroflexus aggregans DSM 9485 Cagg_0500 -33 5.3 TTGTGAACAATTTCACCA
Chloroflexus sp. Y-400-fl Chy400_3620 -33 5.3 TTGTGAATGATTTCACTA
Position: -295
Score: 4.9
Sequence: ATGTGAGGTATGTCACAA
Locus tag: Cagg_0775
Cagg_0775 -295 4.9 ATGTGAGGTATGTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoM3
Ortholog function: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Chloroflexus aggregans DSM 9485 Cagg_0775 -295 4.9 ATGTGAGGTATGTCACAA
Chloroflexus sp. Y-400-fl Chy400_3880 -250 5.2 ACGTGATATTTATCACAA
Position: -125
Score: 5.4
Sequence: TTGTGGCGAATATCACAA
Locus tag: Cagg_0899
Cagg_0899 -125 5.4 TTGTGGCGAATATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hepT
Ortholog function: Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)
Chloroflexus aggregans DSM 9485 Cagg_0899 -125 5.4 TTGTGGCGAATATCACAA
Chloroflexus sp. Y-400-fl Chy400_4040 -123 5.7 TTGTGGTGAATATCACAA
Herpetosiphon aurantiacus ATCC 23779 Haur_2345 -44 4.6 ACGCGATAACTTTCACAA
Roseiflexus castenholzii DSM 13941 Rcas_2323 -48 5.8 TTGTTATGTATTTCACAA
Roseiflexus sp. RS-1 RoseRS_1698 -48 5.3 TTGTTCAGTATTTCACAA
Position: -105
Score: 4.3
Sequence: TTGTGAAAGACTGAACAA
Locus tag: Cagg_0991
Cagg_0991 -105 4.3 TTGTGAAAGACTGAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpB
Ortholog function: ATP synthase A chain (EC 3.6.3.14)
Chloroflexus aggregans DSM 9485 Cagg_0991 -105 4.3 TTGTGAAAGACTGAACAA
Chloroflexus sp. Y-400-fl Chy400_3293 -109 4 TTGTGAAAGATCGAACAA
Roseiflexus castenholzii DSM 13941 Rcas_1271 -36 4.4 TTGTGAAAGTGTTCTCAA
Roseiflexus sp. RS-1 RoseRS_0518 -44 4.4 TTGTGAAAGTGTTCTCAA
Position: -55
Score: 5.2
Sequence: TTGTGATATACTTCTCAT
Locus tag: Cagg_1631
Cagg_1631 -55 5.2 TTGTGATATACTTCTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoA
Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Chloroflexus aggregans DSM 9485 Cagg_1631 -55 5.2 TTGTGATATACTTCTCAT
Chloroflexus sp. Y-400-fl Chy400_2142 -54 5.2 TTGTGATATACTTCTCAT
Herpetosiphon aurantiacus ATCC 23779 Haur_4980 -117 5.1 CTGTGATATACTTCGCAA
Roseiflexus castenholzii DSM 13941 Rcas_2088 -64 5 TTGTGATATACTCAACAA
Position: -68
Score: 5.1
Sequence: ATGTGGTATATTTCACAT
Locus tag: Cagg_1949
Cagg_1949 -68 5.1 ATGTGGTATATTTCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cagg_1949
Ortholog function: GCN5-related N-acetyltransferase
Chloroflexus aggregans DSM 9485 Cagg_1949 -68 5.1 ATGTGGTATATTTCACAT
Chloroflexus sp. Y-400-fl Chy400_1583 -63 4.8 ATGTGGTATATTTCACAC
Roseiflexus castenholzii DSM 13941 Rcas_3936 -44 4.3 TTGTGCAAGATTTCACGG
Roseiflexus sp. RS-1 RoseRS_2002 -40 4.6 TTGTGCAAGATTTCACGT
Position: -56
Score: 4.7
Sequence: AAGTGAATAATATCACTA
Locus tag: Cagg_2026
Cagg_2026 -56 4.7 AAGTGAATAATATCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cagg_2669
Ortholog function: Cytochrome c family protein
Chloroflexus aggregans DSM 9485 Cagg_2669 -28 5 TCGTGATGTTTGTCACGA
Chloroflexus aggregans DSM 9485 Cagg_2026 -145 4.5 GTGACACATATTTCACAA
-56 4.7 AAGTGAATAATATCACTA
Roseiflexus castenholzii DSM 13941 Rcas_3898 -79 5.3 TTGTGATTATTATTACAA
-53 5.2 TCGTGAAGCATATCACGA
Roseiflexus sp. RS-1 RoseRS_0596 -73 5 TTGTGATTATTATTGCAA
-51 5.1 TCGTGAAGTGTATCACGA
Position: -56
Score: 5.2
Sequence: CTGTGCTGTATATCACAA
Locus tag: Cagg_2469
Cagg_2469 -56 5.2 CTGTGCTGTATATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fpr
Ortholog function: Ferredoxin--NADP(+) reductase (EC 1.18.1.2)
Chloroflexus aggregans DSM 9485 Cagg_2469 -56 5.2 CTGTGCTGTATATCACAA
Chloroflexus sp. Y-400-fl Chy400_1671 -61 4.5 CTGTGCTGTAAATCACAA
Roseiflexus castenholzii DSM 13941 Rcas_4255 -115 3.9 CTGTTCCTTTCATCACAA
Roseiflexus sp. RS-1 RoseRS_0005 -106 3.8 CTGTTCCATCCATCACAA
Position: -28
Score: 5
Sequence: TCGTGATGTTTGTCACGA
Locus tag: Cagg_2669
Cagg_2669 -28 5 TCGTGATGTTTGTCACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Cagg_2669
Ortholog function: Cytochrome c family protein
Chloroflexus aggregans DSM 9485 Cagg_2669 -28 5 TCGTGATGTTTGTCACGA
Chloroflexus aggregans DSM 9485 Cagg_2026 -145 4.5 GTGACACATATTTCACAA
-56 4.7 AAGTGAATAATATCACTA
Roseiflexus castenholzii DSM 13941 Rcas_3898 -79 5.3 TTGTGATTATTATTACAA
-53 5.2 TCGTGAAGCATATCACGA
Roseiflexus sp. RS-1 RoseRS_0596 -73 5 TTGTGATTATTATTGCAA
-51 5.1 TCGTGAAGTGTATCACGA
Position: -56
Score: 5.3
Sequence: TTGTTATATCTATCACAA
Locus tag: Cagg_3394
Cagg_3394 -56 5.3 TTGTTATATCTATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acs
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Chloroflexus aggregans DSM 9485 Cagg_3394 -56 5.3 TTGTTATATCTATCACAA
Chloroflexus sp. Y-400-fl Chy400_0662 -54 5.4 TTGTTATCTATATCACAA
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